Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0236 ATGAACATGCCTGGTTTTACGCACTCAGCCTTTGCTTTTGGGCACGAGGCAGGGATTGATAAAAGCAGAATTGATGGTAATTTAGTTCCGCCAGGCGCTCTTGTAACATTTATACAGAAAGGAATTCAATATATTGAGCTGGAGGCAAACTTGAGTGGTAGTGATGCGGACACAGATGAGGATTTCTCATTTCTACAACCTCTTGACCTTATTACAAAGGATCCTAATGAACTGCACAATATGGTTAGAGCCAAAAGGGAAAACCTACGTCAACACAAGTTTGAAGCAAATAAAAAGGTGAACGATTTCAGTCAAGACACTGCAAGGGAACAAGCTCGGGAAATGGACAAAGAGAGCAAGGAAAGGGAAAATGAACATGAAATTGATGAAACACGGCTAGATAAAGAAACAGAACAAGAAAAGGGTGAACATAAAGAAATACAGCATTCAGATCAAAATGGTGCAGAGAAGGACGAAGATAAAATTACAGATGAAAATATAGAAAATGGAGCATGTGAAGGACCTGAGCCAATGGAGATTTCCCAAAGCCCCACGTTTTTGCCTAGCGAAATTCCAACTTGTGAAATAAAAGTTTTGGAAGGTCATACCTCTGAGGTTTTTGCTTGTGCATGGAATCCATCAGGCTCACTTCTTGCATCTGGATCTGGAGATTCAACAGCTCGGATTTGGAAAATTACAGAAGGACATATTAACACTAGCATACAAACTGAACAGATAAATGTTGTGGTGCTAAGGCACTTTAAAGGAAGAACTAGTGAGAAAAGCAAGGATGTGACAACGCTTGACTGGAATGGGGATGGCACATTACTGGCAACTGGTTCATACGATGGTCAAGCAAGAATATGGAGTAGAGACGGAGACTTGAAGAGCACATTAAACAAGCATAAAGGTCCAATCTTCTCTTTGAAATGGAATAAGAAGGGGGATTATCTTCTTAGTGGCAGCGTTGATAAAACTGCTATTGTATGGGATATAAAGACTGGGGAATGGAAACAACAATTTGAATTTCACTCTGCACCTACTCTTGACGTAGATTGGCGAAACAATGTTTCGTTTGCAACTTGTTCGACAGATAACATGATATATGTATGCAAAATTGGAGAGAATCGGCCAATCAAAACTTTCTCAGGGCATCAAGGTGAAGTTAATGCTATCAAATGGGATCCAACAGGCTCTTTTCTGGCTTCTTGCTCAGATGATCACACTGCCAAAATTTGGAGTCTGAAGCAGGACAAGCATTTGCATGATTTGAAGGAACATGTTAAGGAGATATATACCATTCGGTGGAGTCCTACTGGCCCCTGTACAAGCAACCCCAATCAGCCATCGGTTCTAGCAAGCGCCTCCTTCGACTCTACAATAAAGTTGTGGGATGTGGATCTAGGAAAAGTACTTTGCAGCTTAAATGGTCATAGGGATCCTGTATATTCCATTGCATTCAGCCCAAATGGTGAGTATCTGGCGAGTGGCTCCATGGATAAATGCATGCATATATGGTCTGTGAAGGAGGGGAAAATTGTGAAAACATACACTGGAAATGGTGGGATCTTTGAAGTTAGTTGGGACAGAGATGGTGATAAAGTTGCTGCTTGTTTTTCAAACAATATTGTTTGTGTTATGGATTTCCGAATGTAG 1656 0.4094 MNMPGFTHSAFAFGHEAGIDKSRIDGNLVPPGALVTFIQKGIQYIELEANLSGSDADTDEDFSFLQPLDLITKDPNELHNMVRAKRENLRQHKFEANKKVNDFSQDTAREQAREMDKESKERENEHEIDETRLDKETEQEKGEHKEIQHSDQNGAEKDEDKITDENIENGACEGPEPMEISQSPTFLPSEIPTCEIKVLEGHTSEVFACAWNPSGSLLASGSGDSTARIWKITEGHINTSIQTEQINVVVLRHFKGRTSEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGDLKSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDIKTGEWKQQFEFHSAPTLDVDWRNNVSFATCSTDNMIYVCKIGENRPIKTFSGHQGEVNAIKWDPTGSFLASCSDDHTAKIWSLKQDKHLHDLKEHVKEIYTIRWSPTGPCTSNPNQPSVLASASFDSTIKLWDVDLGKVLCSLNGHRDPVYSIAFSPNGEYLASGSMDKCMHIWSVKEGKIVKTYTGNGGIFEVSWDRDGDKVAACFSNNIVCVMDFRM 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0236 551 ProSitePatterns Trp-Asp (WD) repeats signature. 452 466 IPR019775 -
Prci8g0236 551 CDD WD40 195 507 - -
Prci8g0236 551 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Prci8g0236 551 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Prci8g0236 551 PRINTS G protein beta WD-40 repeat signature 452 466 IPR020472 -
Prci8g0236 551 MobiDBLite consensus disorder prediction 94 162 - -
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 424 474 IPR001680 GO:0005515
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 382 416 - -
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 340 IPR001680 GO:0005515
Prci8g0236 551 PANTHER WD40 REPEAT PROTEIN 6 548 IPR045183 GO:0003714|GO:0016575
Prci8g0236 551 SUPERFAMILY WD40 repeat-like 192 549 IPR036322 GO:0005515
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 424 467 - -
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 423 IPR001680 GO:0005515
Prci8g0236 551 SMART WD40_4 247 290 IPR001680 GO:0005515
Prci8g0236 551 SMART WD40_4 292 331 IPR001680 GO:0005515
Prci8g0236 551 SMART WD40_4 192 231 IPR001680 GO:0005515
Prci8g0236 551 SMART WD40_4 510 548 IPR001680 GO:0005515
Prci8g0236 551 SMART WD40_4 334 372 IPR001680 GO:0005515
Prci8g0236 551 SMART WD40_4 468 507 IPR001680 GO:0005515
Prci8g0236 551 SMART WD40_4 375 414 IPR001680 GO:0005515
Prci8g0236 551 SMART WD40_4 417 465 IPR001680 GO:0005515
Prci8g0236 551 Coils Coil 105 125 - -
Prci8g0236 551 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 199 235 - -
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 240 IPR001680 GO:0005515
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 290 - -
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 336 - -
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 475 512 - -
Prci8g0236 551 Pfam WD domain, G-beta repeat 419 465 IPR001680 GO:0005515
Prci8g0236 551 Pfam WD domain, G-beta repeat 511 545 IPR001680 GO:0005515
Prci8g0236 551 Pfam WD domain, G-beta repeat 470 507 IPR001680 GO:0005515
Prci8g0236 551 Pfam WD domain, G-beta repeat 377 414 IPR001680 GO:0005515
Prci8g0236 551 Pfam WD domain, G-beta repeat 196 231 IPR001680 GO:0005515
Prci8g0236 551 Pfam WD domain, G-beta repeat 296 331 IPR001680 GO:0005515
Prci8g0236 551 Pfam WD domain, G-beta repeat 251 290 IPR001680 GO:0005515
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 290 IPR001680 GO:0005515
Prci8g0236 551 Gene3D - 2 74 - -
Prci8g0236 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 475 516 IPR001680 GO:0005515
Prci8g0236 551 FunFam WD40 repeat-containing protein HOS15 188 551 - -
Prci8g0236 551 Gene3D - 188 551 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0236 Prci-Chr8 1472934 1477684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0236 379 549 Miscellaneous Gene Families AT5G08390 27.746 1.20e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0236 K04508 - gmx:100783690 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0236 8 1472934 1477684 Prci8g0236 8 1472934 1477684 ECH