Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0116 ATGGCAGTAGCCAAGCCTTGGCGGGCGCCTCCAAACGCCTCTCTTGTAACCTCCATAACTTCACTCCTTCAAACCCTAAATCCCCAGAACTCTAACATCAGTTCGCTACCCCTTAACCAATTCTCTTCTTATCTCAATCCAGAGTTGGTTATCCAAGTAATTAAGAACCAGGACAACCCCTTCCACGCTCTCTTCTTCTTCAACTGGGCCTGCAACCCCCAACCCAACACTAATAACTACTGCCATACTCGCTCCTGTTACGTCGCCATCACTGACGTCTTACTTTCCCACTCCCTTTTCTCCACCGCCTTCTCCCTCCTTCACCACTCTCGCGAAGTCTCCGACTATATCATCGCCAGATTCATCAAAGCCTTCGGTGATCGTGGTGATATTAGGGGTGCCATTCATTGGTTCCACTACGTCAAATCGTTTGAAAGAGGCCGTTGTTTGTGCTCCTATAATTCGATTTTAGGTGTGTTGGTGAGAGCAAATCGAACGAATTTGGCCAAGGCTTTCTACGATCAGCTTGTGAAGGAAGGTGTGGTGGTGCCTGATGTTTATACTTATACCACGATGATTAGAGGCTTCTGTAAAATGGGTATGGTGGAGTGTGCCCAGAAGGTGTTCGATGAAATGAAGTGTGACCCGAACTCCGTCACTTACAACACAATGATCAATGCATTTTGTAAGAAAGGTGATATGGCGAGTGCCACAAGGATTCTTCATCAAATGATTGAAAGTAAGAAATGTGTACCAGATGTGGTAACTTACACGACTTTGATTGATGGTTACTCTAAGAAAGGAGAATCGCACGAGGCAATGAAGTATATGATGGAGATGGCGAAGCATGGTTGTGACCCTAATGTGTTGACCTACAATGCACTCATAGAGGGTCTTTGTCTAAGCGGAAAGGTAGATGAAGGGAAGAGGATGATGACTAGGATGCGGTTAAGTGGCTTAAGAGACGATATTGTCACACATACGAGCATATTGAAGGGATTTTGCATAGTGGGCAAGTCTGATGAAGCTTTCAAGCATATCAAGGAAATGGTTAGTCTTGGGATGAATCCAGATGTGAAGTCATATGGCATTATTGTTAACGAGTGTTGCAAAATTAGAAAACCAGAAGAAGCAATTTCACTTCTAAGGGAAATGAGGGCCAGGGGCATTAAGCCAAGTGTGTCGAGTTTCAATGCAGTATTCAGAGTTCTTGTGGGCATGGGGAGGCTGCAAGATGCCATTCTTCTTTTAAAGCAGATGCCAGAATTTGGCTGCTCGCCTAATTTCTTATCATACAGCGAAGTGGTATGTGGCCTTTGTAAAGTGAAGGGTAGGATGCTAGAAGTTGAAGAGCTGGTTAGGGACATGCTTCGGAATGGATATAAGCTGGATGCTACCATGTACAGCTGCTTACTTAGGGGGTACTGTGAGGACGGCAATGAGCAAATGGCACTGCAGACGGTTCATGACATGATTAGCGATAACTTTGTTGTTAGTTTAGATACCTTCTCTAAATTTGTCAGTGTGTTGTTCGCAAAGGGATATAACAAAGAGGTTGAGATGGTACATGAAGAGATGATCAGCAGATGCCCTGTACCTGAACCCGACGCAGAGGCATACAAAATGGCTTTACTTTCAACTGTGGATTCATACTTACGTTCGGCAGAGTAA 1671 0.4464 MAVAKPWRAPPNASLVTSITSLLQTLNPQNSNISSLPLNQFSSYLNPELVIQVIKNQDNPFHALFFFNWACNPQPNTNNYCHTRSCYVAITDVLLSHSLFSTAFSLLHHSREVSDYIIARFIKAFGDRGDIRGAIHWFHYVKSFERGRCLCSYNSILGVLVRANRTNLAKAFYDQLVKEGVVVPDVYTYTTMIRGFCKMGMVECAQKVFDEMKCDPNSVTYNTMINAFCKKGDMASATRILHQMIESKKCVPDVVTYTTLIDGYSKKGESHEAMKYMMEMAKHGCDPNVLTYNALIEGLCLSGKVDEGKRMMTRMRLSGLRDDIVTHTSILKGFCIVGKSDEAFKHIKEMVSLGMNPDVKSYGIIVNECCKIRKPEEAISLLREMRARGIKPSVSSFNAVFRVLVGMGRLQDAILLLKQMPEFGCSPNFLSYSEVVCGLCKVKGRMLEVEELVRDMLRNGYKLDATMYSCLLRGYCEDGNEQMALQTVHDMISDNFVVSLDTFSKFVSVLFAKGYNKEVEMVHEEMISRCPVPEPDAEAYKMALLSTVDSYLRSAE 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0116 556 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 36 352 - -
Prci8g0116 556 Gene3D Tetratricopeptide repeat domain 19 209 IPR011990 GO:0005515
Prci8g0116 556 Gene3D Tetratricopeptide repeat domain 422 495 IPR011990 GO:0005515
Prci8g0116 556 Pfam PPR repeat family 323 371 IPR002885 -
Prci8g0116 556 Pfam PPR repeat family 252 300 IPR002885 -
Prci8g0116 556 Pfam PPR repeat 182 213 IPR002885 -
Prci8g0116 556 Pfam PPR repeat 214 244 IPR002885 -
Prci8g0116 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Prci8g0116 556 Gene3D Tetratricopeptide repeat domain 210 315 IPR011990 GO:0005515
Prci8g0116 556 Gene3D Tetratricopeptide repeat domain 316 421 IPR011990 GO:0005515
Prci8g0116 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Prci8g0116 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Prci8g0116 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 215 IPR002885 -
Prci8g0116 556 Pfam Pentatricopeptide repeat domain 452 507 IPR002885 -
Prci8g0116 556 Pfam Pentatricopeptide repeat domain 380 434 IPR002885 -
Prci8g0116 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 463 IPR002885 -
Prci8g0116 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 252 IPR002885 -
Prci8g0116 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Prci8g0116 556 SUPERFAMILY HCP-like 129 308 - -
Prci8g0116 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Prci8g0116 556 NCBIfam pentatricopeptide repeat 291 320 IPR002885 -
Prci8g0116 556 NCBIfam pentatricopeptide repeat 396 428 IPR002885 -
Prci8g0116 556 NCBIfam pentatricopeptide repeat 325 359 IPR002885 -
Prci8g0116 556 NCBIfam pentatricopeptide repeat 467 499 IPR002885 -
Prci8g0116 556 NCBIfam pentatricopeptide repeat 152 185 IPR002885 -
Prci8g0116 556 NCBIfam pentatricopeptide repeat 219 254 IPR002885 -
Prci8g0116 556 NCBIfam pentatricopeptide repeat 255 289 IPR002885 -
Prci8g0116 556 NCBIfam pentatricopeptide repeat 187 214 IPR002885 -
Prci8g0116 556 NCBIfam pentatricopeptide repeat 361 394 IPR002885 -
Prci8g0116 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Prci8g0116 556 Pfam PPR repeat 152 181 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0116 145 541 Glycosyltransferase AT1G05670 28.109 1.80e-52 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0116 - - qsa:O6P43_015860 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0116 8 740385 744122 Prci8g0116 8 740385 744122 ECH