Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0009 ATGGGAACTCTTCTGAAATGCTACAGATCCTTCTTCTTGATGCTTCCCTATCCGGCTCGAACGATTCAATTCAGAACCAACCAGCTGGGCCCCGCCGCCATTTTCAGAAGGAAGAAGCTGGGTTCGGTTACTCGTTGTTTTAGTGCCCGTTCTTTGCGGTCATACCAACCGTCGCTTACTGAACAGAGCGCCGGAAAATTCGACGGTGAGAGGGGTAGAAGTCCATCGCCGGAGCTATGGCTTTATAACACAATGAGTAAAGGGAAAGAGCTGTTTAAACCCAAAGTGGAAGGGAAAGTCGGAATGTATGTCTGCGGAGTTACTGCATATGACCTTAGCCATATTGGACATGCTCGCGTCTACATCAATTTTGACGTTCTTTACAGATATCTTAAGCATATGGAATTTGAAGTCTGTTATGTTCGCAATTTCACTGACGTAGATGACAAGATAATTGCTAGAGCAAAGGAGTTAGGAGAGGATCCAATCAGTTTGAGTCGACGCTATTGTGAAGAGTTTAGTGAAGACATGGCAACTCTTCATTGTCTACCACCTTCTGTGGAACCACGAGTATCGGAGCATATGCCCCACATCGTTGATATGATTGAACAGATTATTAAAAATGGGTATGCCTACATTGTTGATGGGGATGTGTACTTTGACGTTGAAAAATTTCCAGAATATGGGCAGTTATCTGGACGAGATCTTCAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCAGGAGAGCCATTTTGGGAGAGTCCCTGGGGCCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCTATGAGTGCAGCTCATCTTGGCTACTCTTTTGATATCCATGGTGGAGGGATCGACCTTGTGTTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCATGCAAGAAAAGTAATGTAAGTCTCTGGATGCACAATGGTTTTGTCACTGTTGACTCAGAGAAGATGTCCAAGTCTCTGGGAAATTTTTTCACCATACGACAGGTTGTAGATGTTTACCATCCGCTGGCTTTGAGATATTTTTTGATGGGAGCCCACTATCGATCTCCCATTAACTATTCTCATGTACAGCTTGAAAGTGCTTCAGACCGTGTTTTCTATATATACGAGACTCTATATGAATGTGAAAGCTTTCTGTGCCAACATGATCTCACAAACATGAAGGATTCCATCCCACCTGATATTTTAGATATTATTAATAAGTTTCATGACGCTTTTGTGGCTTCAATGTCTGATGACCTCCACACCCCCGTTATATTGGCTGCACTGTCTGACCCATTAAAAGCAATCAATGATCTGCTACTTACTCGCAAGGGGAGAAAACGAGAATTACGAATCGAATCTCTTTCAGCTCTGGAGAAGCATATTAGGACCGTTCTGACTGTTTTAGGACTTATGCCTGCAAGTTATTCAGAGGTTTTGCAACAACTAAATGAAAAGGCTTTAAAGCGTGCAAATTTGACAAAAGAACAAGTCTCGCAGAAAATTGAAGAACGGGCTGCTGCTAGAATGAACAAGGAGTATGAAAAATCAGATGCAATTAGGAATGATTTGGCAGTTTTAGGTATTGCTCTTAAGGACAGTCCAAACGGTACAACGTGGAGGCCCACCATTCCTCTTTCACTTCAAGAACAGCAGACTAATGCACCTTGA 1734 0.4308 MGTLLKCYRSFFLMLPYPARTIQFRTNQLGPAAIFRRKKLGSVTRCFSARSLRSYQPSLTEQSAGKFDGERGRSPSPELWLYNTMSKGKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYINFDVLYRYLKHMEFEVCYVRNFTDVDDKIIARAKELGEDPISLSRRYCEEFSEDMATLHCLPPSVEPRVSEHMPHIVDMIEQIIKNGYAYIVDGDVYFDVEKFPEYGQLSGRDLQDNRAGERVAVDSRKKNPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSAAHLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSNVSLWMHNGFVTVDSEKMSKSLGNFFTIRQVVDVYHPLALRYFLMGAHYRSPINYSHVQLESASDRVFYIYETLYECESFLCQHDLTNMKDSIPPDILDIINKFHDAFVASMSDDLHTPVILAALSDPLKAINDLLLTRKGRKRELRIESLSALEKHIRTVLTVLGLMPASYSEVLQQLNEKALKRANLTKEQVSQKIEERAAARMNKEYEKSDAIRNDLAVLGIALKDSPNGTTWRPTIPLSLQEQQTNAP 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0009 577 NCBIfam cysteine--tRNA ligase 79 562 IPR015803 GO:0004817|GO:0005524|GO:0006423
Prci8g0009 577 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 417 563 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Prci8g0009 577 Gene3D - 382 563 - -
Prci8g0009 577 FunFam Cysteine--tRNA ligase 78 379 - -
Prci8g0009 577 CDD CysRS_core 80 381 IPR032678 -
Prci8g0009 577 Pfam DALR domain 432 493 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Prci8g0009 577 SMART dalr_2_4 432 501 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Prci8g0009 577 PANTHER CYSTEINYL-TRNA SYNTHETASE 74 573 IPR024909 -
Prci8g0009 577 Pfam tRNA synthetases class I (C) catalytic domain 92 388 IPR032678 -
Prci8g0009 577 PRINTS Cysteinyl-tRNA synthetase signature 102 113 IPR024909 -
Prci8g0009 577 PRINTS Cysteinyl-tRNA synthetase signature 267 285 IPR024909 -
Prci8g0009 577 PRINTS Cysteinyl-tRNA synthetase signature 298 319 IPR024909 -
Prci8g0009 577 PRINTS Cysteinyl-tRNA synthetase signature 138 147 IPR024909 -
Prci8g0009 577 Hamap Cysteine--tRNA ligase [cysS]. 79 564 IPR015803 GO:0004817|GO:0005524|GO:0006423
Prci8g0009 577 Gene3D HUPs 64 381 IPR014729 -
Prci8g0009 577 SUPERFAMILY Nucleotidylyl transferase 78 388 - -
Prci8g0009 577 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 381 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0009 Prci-Chr8 28735 33044 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0009 K01883 - qsa:O6P43_019465 941.028