Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2924 ATGGGAGGTGTTAGCTTTGAAATTAGTAGAAATTCAGCTTTTGCTATGCATTGCTATGGAAATTCGTTTTCTTCCGGGGTTACGGTATCTTGGAGACCCTTTCTTGGTACGTCTTTGGACACTAGAACTGCAAGGAAATATCAAGTTTTTCATGCTCAAAAGCTCAATTATGGACCAGCTTGTGCTTCGTCGAAGAGTGTCTTCAACGCTGGGTTGATTAGTGATGGTCTGGTTTCAAGTGAATTAGAGTTTAAGCCATCATTCGATGATTATTTGAAGGAAATGGATTCTGCCAGAGCGGACAAGGAAAAATTGTCCTCCAGAAATGTTAGGGTAAAGAAGCATGCTGCCAATACTGAAAACCAAAAGAGGGAAAAGGTTATGTCGAGGAAACCAAGGTTGGAAGGAGTTGAAAAAAGTACAAAACTTGAAAAGCTGGGAGGACATGTGGATAAAACAAATGAGTTAGGATTTGCTGAAAAAAATGGGGCATTGCAAGTAGTTGAAACAGTCCTGGGAAAAGAAAGCTCCTCCGTAGGTCATATTAAGCTCAGACCACGAGGGGCTAAAAGACGTGAACCTGAGTATGACGGGGAAGAAAGCAAGCTTGATAGTGCTGTGAAGCAGAAAAAGGAGGCAGAGGTAATAGAAGACAGGTGGTTGGAATGCCGGATTAATAGATCAAAACCAGATTCTGATGGCAGTTTGTTTAAAAGGGAACGTAGAAGGACAGGCAATAGCAAAGCTTCACTTAATCGGAACAGCAACTGTGGCAACACCATAGAGGTGGAAGTCGGCCACGAAGTACAATCTTTAAAGATGGTAGGAGAAAAGGATGTTACAACCCGCCAAATATGCTGCAACTCAAAAGGGAAAATGCCTATGATAAACAAAACTGTTGTTAGCAACAACGGCATTCACAATGGACGTGAGAAAATCTGCACAAAAAATGAGAACGTGGGGAAAGAAAATGGGTGGGAAAATCTCAACTTGAATGGAAGCATTAGATGTTATGGTTATGACAACTTGGAGGTGGAAAGAGCAGCATTTAAGACTTTTGAAGAGTTGAATGGTGTTGTCAACAAGCCACAGGTTTCGCACAAGGAAACGGAGGATAGAATCCAAAGGCTAGCAAATTCGTTGAATGGTGCTGATATAAATATGCCTGAATGGATCTTTTCTAAGATGATGAGAAGTGCAAAGATAAAATTTAATGATTATTCTATTGTGAGGGTTATCCAAAGATTGGGAAAACTAGGAAACTGGCAGCGGGTGATACAGGTCATTGAATGGCTTCAAAGGCGTGAGCGTTTCAAATCCCACAAGCTAAGGCATATATACACTGCTGCTCTTGATGCACTTGGAAAGGCAAGGAGACCCATAGAGGCACTAAATGTATTTCACGCGATGCTGCAACAATTGTCCACATACCCTGATTTGGTAGCTTACCGTAGTATTGCTGTCACTCTTGGACAAGCAGGGCACATGAAGGAACTCTTTGATGTGATTGACATCATGCGGTTGCCACCTAAGAAGAAGTTCAAAGTAGGGGCACTTGGGAACTGGGACCCTAGGCTGGAACCAGATGTCGTAGTTTATAATGCCGTCCTCAACGCTTGTGTTCAGCAGAAACAGTGGGAAGGGGCTTTCTGGGTTTTACAGCAGTTAAAGAAGCAACGTCAACAACCTTCTACTACAACTTCTGGCCTTGTCATGGAGGTGATGTTTACATGTGGCAAGTACGATCTAGTTCATGAATTTTTCATGAAAGTTCAGAAGTTTTCTATTCCCAATGCATTGACATATAGAGTTCTTGTGAATACACTATGGAAAGAGGGCAAAACTGATGAGGCTATATTGGCAGTGCAAGATATGGAAAGACGAGGAGTTGTAGGTTCTGCTTCTCTTTATTATGACCTTGCTCGATGTCTTTGTGCAGCTGGAAGGTGTGGTGAGGCACTGATGCAGATAGAGAAGATATGCAAGGTTGCAAACAAGCCACTTGTAGTGACTTACACCGGCTTAATTCAAGCATGTCTGGAATCTGGAAACATACAAGATGGGGCATACATTTTTGAAAAAATGAAGGATGTTTGCTCCCCTAATCTTGTTACTTGTAATACAATGCTGAAAGCTTACCTGGAATATGGGATGTTTGAAGAAGCAAAAGAATTGTTTGAGAAGATGTCAGAAAACACGAATCATGTGAGGAGAAATTCTGATTACAAAGTTGTGGTGATACCAGATATTTACACATTCAACACCATGTTAGATGCATGCATTGTAGAGAAGAAATGGAATTATTTTGACTACGCTTATCAAAAGATGCTATACCATGGTTACCACTTCAATCCAAAACGTCATCTTCGAATGATACTGGAGGCATCAAGAGCTGGAAAGGAAGAGCCTATTGAAACGACGTGGAAGCACTTGATCCAAACAGATCGTATTATTCCAGCTACTCTTATAAAGGAAAGATTCTGTATGAAGCTTGAAAAGGATGACCATGTTGAGGCTCTTAGATGTATCACCAGTGATCTCTCTAAAGACATGCAGGCATTTTCTAAGCTATCTTGGTTGAATCTATTGAAAGAAAATGCTCAACGCTTTCAGAAGGATACACTAGTTAGGTTAATGGATGACGTAAACACCTTAGTTTCCAAAAGTAGTTTGTCACTTCCAGCACTTGAAGCACTTGAAAACCTAATGCTATCTTGGAAAGAAATCTGTACCCTGACCTTGGTGTGA 2748 0.4112 MGGVSFEISRNSAFAMHCYGNSFSSGVTVSWRPFLGTSLDTRTARKYQVFHAQKLNYGPACASSKSVFNAGLISDGLVSSELEFKPSFDDYLKEMDSARADKEKLSSRNVRVKKHAANTENQKREKVMSRKPRLEGVEKSTKLEKLGGHVDKTNELGFAEKNGALQVVETVLGKESSSVGHIKLRPRGAKRREPEYDGEESKLDSAVKQKKEAEVIEDRWLECRINRSKPDSDGSLFKRERRRTGNSKASLNRNSNCGNTIEVEVGHEVQSLKMVGEKDVTTRQICCNSKGKMPMINKTVVSNNGIHNGREKICTKNENVGKENGWENLNLNGSIRCYGYDNLEVERAAFKTFEELNGVVNKPQVSHKETEDRIQRLANSLNGADINMPEWIFSKMMRSAKIKFNDYSIVRVIQRLGKLGNWQRVIQVIEWLQRRERFKSHKLRHIYTAALDALGKARRPIEALNVFHAMLQQLSTYPDLVAYRSIAVTLGQAGHMKELFDVIDIMRLPPKKKFKVGALGNWDPRLEPDVVVYNAVLNACVQQKQWEGAFWVLQQLKKQRQQPSTTTSGLVMEVMFTCGKYDLVHEFFMKVQKFSIPNALTYRVLVNTLWKEGKTDEAILAVQDMERRGVVGSASLYYDLARCLCAAGRCGEALMQIEKICKVANKPLVVTYTGLIQACLESGNIQDGAYIFEKMKDVCSPNLVTCNTMLKAYLEYGMFEEAKELFEKMSENTNHVRRNSDYKVVVIPDIYTFNTMLDACIVEKKWNYFDYAYQKMLYHGYHFNPKRHLRMILEASRAGKEEPIETTWKHLIQTDRIIPATLIKERFCMKLEKDDHVEALRCITSDLSKDMQAFSKLSWLNLLKENAQRFQKDTLVRLMDDVNTLVSKSSLSLPALEALENLMLSWKEICTLTLV 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2924 915 MobiDBLite consensus disorder prediction 231 255 - -
Prci6g2924 915 Coils Coil 88 122 - -
Prci6g2924 915 MobiDBLite consensus disorder prediction 186 205 - -
Prci6g2924 915 Pfam Pentatricopeptide repeat domain 668 713 IPR002885 -
Prci6g2924 915 Pfam Pentatricopeptide repeat domain 526 567 IPR002885 -
Prci6g2924 915 Pfam PPR repeat 446 472 IPR002885 -
Prci6g2924 915 Pfam PPR repeat 601 630 IPR002885 -
Prci6g2924 915 Gene3D Tetratricopeptide repeat domain 372 516 IPR011990 GO:0005515
Prci6g2924 915 Gene3D Tetratricopeptide repeat domain 663 797 IPR011990 GO:0005515
Prci6g2924 915 NCBIfam pentatricopeptide repeat 670 697 IPR002885 -
Prci6g2924 915 NCBIfam pentatricopeptide repeat 704 732 IPR002885 -
Prci6g2924 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 702 732 IPR002885 -
Prci6g2924 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Prci6g2924 915 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Prci6g2924 915 SUPERFAMILY TPR-like 598 731 IPR011990 GO:0005515
Prci6g2924 915 FunFam Pentatricopeptide repeat-containing protein 372 518 - -
Prci6g2924 915 Gene3D Tetratricopeptide repeat domain 523 662 IPR011990 GO:0005515
Prci6g2924 915 PANTHER OS01G0674700 PROTEIN 20 903 IPR044645 GO:0009658
Prci6g2924 915 MobiDBLite consensus disorder prediction 188 205 - -
Prci6g2924 915 MobiDBLite consensus disorder prediction 231 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2924 Prci-Chr6 42490662 42511303 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g2924 528 759 Glycosyltransferase AT1G05670 22.979 1.48e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2924 - - pcin:129314191 1273.46