Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2530 ATGGATGGGTATGAAGCTACAAGAATTGTTTTCTCACGGATCCAAAACTTGGACCCTGAGAATGCTTCCAAAATCATGGGCCTGCTTCTGATTCAAGACCATGGGGAGAAAGAAATGATTAGATTAGCATTTGGTCCTGAAGCTCTGGTTCACTCTGTGATTGTCAAAGCTCGCAGGGACTTGGGATTATCCTCGTACTCTCCGTCTACACCTTCAACTCCTCCTCCATCTTCTTCTTCGTCGTCTTTCCTTTCAAGGCAAAATTCTACTCCTTCAAGGCTAAGCAACACCGGAGTCAACTTTCCTCCTCCTGCTCTTACAATCCCAAACCCCTCTTCTTCACCGGCTTGGGCTGATAACTTGATGAGCCCAAACAACAATTTGCTTGTTGGCTCTAATTCTCCGCATATCAACGTTCCATCGCCATCTTCTTCCTTACCCTTTTATGGGTCTGATCCAATTGACGAGTTTCAACTTCAGGACCAGCTTTCTTTCCTCAATGATGGCTCTCCTACCCTTGGCAGGAAGAACCCAGATTTGTTCTATCCTCAATCTGACTTATCTTCTAGTCCTACCGGCGGCGACACTACCGTTTTCCCCTCTTACGGGTGGGGCGGGTCAGTCCATCGCCGAAGCTGCTCTGTTAATGAAGCTTGTTTGGGGTCTGAGGATCCGAATTCTGGGTTGGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTATTGCAAAAACGGCACTAGCTGTAGGTTCCTTCATGGGGGAGGAATTGGAGATTCTGATGGTGTTTCAATGGTTGGGTCTCCCAGTAAGATTGAGATGTTGGACCAGAGCAGCCATGAGCTTCTCAGATCTAAAACTGCTCAGCAGCAAAGATATCTCATGCCTTCTTCTATGCCTTACTCTCCAAAGGGCATGAATTTTCTACTACAGCAGCAGCAAAATGATACCCAGAGAGCTGCAGCCGCACTTATGATGAACGAGGATTTGCACAAGTTTGGGCGATCCAGGCTAGAAAGAAATGATTTTTCACTTAATGGAGGTTCTGGAATAGGAAACCCAGCTTCCAGGCAGATCTACTTGACCTTTCCAGCTGATAGTACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCTGTTCAAGATGTGAGGATTCCATACCAGCAGAAGCGTATGTTTGGATTCGTCACTTTCGTACATCCAGAGACTGTGAAGCTCATCCTGTCCAAGGGAAACCCCCATTTCGTCTGTGATGCTCGCGTGCTAGTCAAGCCTTACAAGGAAAAAGGCAAAGTCCCAGACAAGAAACAGGTTGAAAGGGGGGATTTCTCACCGTGTGGTACTCCTACTGGACTTGACGCTAGGGATCCATTTGATCTCCAACTTGGAGGGAGAATGTACTATAATACTCAAGATATGCTGTGGAGGAGGAAGTTGGAGGAGCAAACTGATTTGCAGCAAGCTCTTGAGCTCCAGAGTAGGAGACTCATGGGTCTACAACTTCTTGACATCAAGAAGCAGCACCAGAGAGCATTTTCAACAGGAAGCCCAATTCCTCCCCCTACTCCCGCTCCCAACATAGTCAATCAGAATCTTGTTCTTCCTTCATTTCATGGTGGCAACTCTGAGGCATCACCAGAGGATTGTGGTTTGAGCTCTGCTCCTGCAAGCACGGCACCTATCTCTGTTTCTCAGCAGCCACCAATGCAGCCAAAGGTGAATATTTCTGTTGGCAACGTGACAACCAATGGCGAAAATGGAGGTAGCAGTGGCAGTGATGGCAATGACAAGCTGAGCTCTAGTCATGAAGATTGTAATTTTCAAGAATGTTGCAGTTTGGAGCATAACCTCCCAGATAGCCCTTTCGCTTCTCCCACAAAAGCTGCTGGAGATTACATGGCTACTTTCTCCAATGGAGGACCTAATGAGGCCATTGATTCAGATGGCTCAGCTGCATCTACCAACTCCGAATTTGGCGCTACAAATGCATTTCTTCCAGCGCCATCTTCTCTTGACGTGGGATCTTTCAAATCCTTTAATTGTCAGATTCCCAGGTTTTCTTCCGGTCATGGGAACATTGAAATGTTTGCCGGCAAGGGTGGTGGACCCATTGCCATTTAG 2130 0.4681 MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVIVKARRDLGLSSYSPSTPSTPPPSSSSSSFLSRQNSTPSRLSNTGVNFPPPALTIPNPSSSPAWADNLMSPNNNLLVGSNSPHINVPSPSSSLPFYGSDPIDEFQLQDQLSFLNDGSPTLGRKNPDLFYPQSDLSSSPTGGDTTVFPSYGWGGSVHRRSCSVNEACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGGIGDSDGVSMVGSPSKIEMLDQSSHELLRSKTAQQQRYLMPSSMPYSPKGMNFLLQQQQNDTQRAAAALMMNEDLHKFGRSRLERNDFSLNGGSGIGNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVHPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQVERGDFSPCGTPTGLDARDPFDLQLGGRMYYNTQDMLWRRKLEEQTDLQQALELQSRRLMGLQLLDIKKQHQRAFSTGSPIPPPTPAPNIVNQNLVLPSFHGGNSEASPEDCGLSSAPASTAPISVSQQPPMQPKVNISVGNVTTNGENGGSSGSDGNDKLSSSHEDCNFQECCSLEHNLPDSPFASPTKAAGDYMATFSNGGPNEAIDSDGSAASTNSEFGATNAFLPAPSSLDVGSFKSFNCQIPRFSSGHGNIEMFAGKGGGPIAI 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2530 709 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368 413 IPR000504 GO:0003723
Prci6g2530 709 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 432 IPR000504 GO:0003723
Prci6g2530 709 ProSiteProfiles Zinc finger C3H1-type profile. 228 255 IPR000571 GO:0046872
Prci6g2530 709 MobiDBLite consensus disorder prediction 535 603 - -
Prci6g2530 709 SMART c3hfinal6 230 254 IPR000571 GO:0046872
Prci6g2530 709 SUPERFAMILY CCCH zinc finger 231 253 IPR036855 GO:0046872
Prci6g2530 709 MobiDBLite consensus disorder prediction 65 112 - -
Prci6g2530 709 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 631 - -
Prci6g2530 709 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 253 IPR000571 GO:0046872
Prci6g2530 709 MobiDBLite consensus disorder prediction 549 599 - -
Prci6g2530 709 MobiDBLite consensus disorder prediction 76 103 - -
Prci6g2530 709 SUPERFAMILY RNA-binding domain, RBD 368 446 IPR035979 GO:0003676
Prci6g2530 709 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 363 434 - -
Prci6g2530 709 Gene3D - 355 450 IPR012677 -
Prci6g2530 709 CDD RRM_AtC3H46_like 358 427 IPR034365 -
Prci6g2530 709 SMART rrm1_1 357 427 IPR000504 GO:0003723
Prci6g2530 709 Gene3D - 223 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2530 Prci-Chr6 36824199 36829095 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2530 - - gmx:100801807 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g2530 6 36824199 36829095 Prci6g2530 6 36824199 36829095 ECH