Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g2521 ATGAACTCCCACATTTCAAAATCCAAACTTTCTCCTTCATTCTTACTCTCTGAAGCATCAAGCTCTACCAGCAGCGAAACTGAAGAAGAAACCAGTCCCTTTTCGTCCAACCAATTTTCCAAATCCTCGTCACATCGTCCATTGGCCATTCTTTCAGGCCACGTTGCCTCTGTTTCTTGCTTGTCTCTGACTGGACAGTTCATACTAAGTGCCTCTCAGAGCAACGACATCATTGTATGGCAACAGCACCAACAAGATTTCAGACTTCTCACAAAGTTCGGACATGGAGATGGGTCGGTGAAATCCCTAGTCACGGTCGGAAACAAGATCTTCTCAGCTCATCAAGATGGGAAAATCAGAGTTTGGAAGGTTTCTAGGAGGAGCTCAGAGAATGTGTTCAAGTTAGTTGAAACTCTGCCGACAACGAAGGATTATTTGGGGAAATTCATGAAACAGAGTAACTATGTCCAAACAAGAAGACACCACAAGCATCTGTGGATTGAGCATTCAGATAGCATCTCATGCTTGACGGTCTGTAATGGTTTGATCTATTCTGGGTCATGGGACAAGACCCTGAAGGTGTGGAAGCTATCAAGCTTCAAGTGCTTAGAATCCATTAAAGCTCATGATGATGCCATTAATGGGTTAGTAGCTTGTAAAGGGGTTGTTTATTCTGCTTCTGCAGACGGAAAAATCAAAGCTTGGGGAAGAAAAGTGGTGAAGAAGAACAAGAAGAAGATCTCACATTGTTTAAAAGGGGTTTTGAAGTGTCATAAAGATTCATCCTTTAATTGTGTGGCTGTTTCTGAAGATGGGAAATGGATATATGGAGGCGATTCTACTGGTTTTATAATGGAATGGGGAGAATTGAAGAATTGA 879 0.4209 MNSHISKSKLSPSFLLSEASSSTSSETEEETSPFSSNQFSKSSSHRPLAILSGHVASVSCLSLTGQFILSASQSNDIIVWQQHQQDFRLLTKFGHGDGSVKSLVTVGNKIFSAHQDGKIRVWKVSRRSSENVFKLVETLPTTKDYLGKFMKQSNYVQTRRHHKHLWIEHSDSISCLTVCNGLIYSGSWDKTLKVWKLSSFKCLESIKAHDDAINGLVACKGVVYSASADGKIKAWGRKVVKKNKKKISHCLKGVLKCHKDSSFNCVAVSEDGKWIYGGDSTGFIMEWGELKN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g2521 292 SMART WD40_4 86 123 IPR001680 GO:0005515
Prci6g2521 292 SMART WD40_4 44 81 IPR001680 GO:0005515
Prci6g2521 292 SMART WD40_4 199 236 IPR001680 GO:0005515
Prci6g2521 292 SMART WD40_4 159 196 IPR001680 GO:0005515
Prci6g2521 292 SMART WD40_4 248 288 IPR001680 GO:0005515
Prci6g2521 292 MobiDBLite consensus disorder prediction 1 42 - -
Prci6g2521 292 SUPERFAMILY WD40 repeat-like 47 287 IPR036322 GO:0005515
Prci6g2521 292 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 19 288 IPR045182 -
Prci6g2521 292 Gene3D - 147 288 IPR015943 GO:0005515
Prci6g2521 292 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 205 IPR001680 GO:0005515
Prci6g2521 292 Pfam WD domain, G-beta repeat 90 123 IPR001680 GO:0005515
Prci6g2521 292 Pfam WD domain, G-beta repeat 253 281 IPR001680 GO:0005515
Prci6g2521 292 Pfam WD domain, G-beta repeat 47 80 IPR001680 GO:0005515
Prci6g2521 292 Pfam WD domain, G-beta repeat 167 196 IPR001680 GO:0005515
Prci6g2521 292 PRINTS G protein beta WD-40 repeat signature 183 197 IPR020472 -
Prci6g2521 292 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
Prci6g2521 292 PRINTS G protein beta WD-40 repeat signature 110 124 IPR020472 -
Prci6g2521 292 FunFam BnaA09g28200D protein 156 240 - -
Prci6g2521 292 Gene3D - 13 146 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g2521 Prci-Chr6 36740116 36741596 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g2521 - - lja:Lj0g3v0363449.1 384.03