LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci6g1872	ATGGCTGATGAAGATTCAAAGCCAAGCATTTCTGTCACTGAGACGAAAGAATTAGGGTCGCCGAAGGTTACGGCGGAGTCTGATTCACCCGATGTAGCATCTGCCTCAGCTGTTGAATCCGACTCGGCAGCGGTTAATACTGAAAACACAGACCTGCCTCCTCCGCCGCCATCGGAATCACTTGCAGCAGAAGCTTCTACGGTGGTAGAGACAGAGCAGCCGCCGCCGCCGCCCACTGAAGACATCGATGTAAAAGCTAAAAGTTCAGACACTAAAGAGGATTCCGTAGCCGCTCAGGATGAGAGATCGAAAAAGTTGCCTCAGAATCTGGTCTCGTTCAAGGAAGAGAGCAATTTAGTGGCTGATCTCTCGGATTCTCAGAGAAATGCTTTCGAAGAGTTTAAGAAGCTGGTTCGAGAGGCACTAGACACTCATCAGTTCACTTCTTCGGTACCACCCAAAACGACGCCGGTTCCCGCTGAAACCACCCCAGCAGCTAAGGAAGTTGCAAAAGCTGAAGGAGCCTCTTCGGAATCAGATGCCAGCACGGAGGTACAGCCACAGCATGAAACCAAACTTGAAGAAAACCCAGTGAAGGGAGCAGAGGAAGTAGCGAAAACATCCGAGGAACAGGTTTTTATATGGGGAGTTCCTCTGCTGAAGGATGACAGGAGTGATGTGATTCTGCTCAAGTTTCTTAGAGCCCGAGATTTCAAAGTGAAGGATGCGTTTATCATGATTAAGAACACAATAAGCTGGAGGAAAGAGTTCAACATCGACGCACTTGTCAATGAAGATCTAGGAGATGATCTGGAGAAAGTGGTGTTCATGCACGGTTATGATAGGGAAGGGCATCCCGTTTGCTATAATGTCTATGGAGAATTTCAGAACAAGGAGTTGTATCAAAAGGCATTCTCAGATGAGGAGAAACGAGCCAAGTTCCTCCGATGGCGGATACAATTCTTGGAGAGGAGTATTAGGAAGCTTGATTTTACTCCTGGTGGTGTCAATACCATTTTCCAAATTAACGATCTTAAAAATTCTCCTGGGCCAGGCAAGCGGGAACTTCGAATTGCCACCAAACAAGCTTTGCAATTGCTTCAGGACAATTATCCTGAGTTCGTTGCCAAACAGGTTTTTATCAATGTGCCATGGTGGTATCTTGCATTCTATACGATGATCAGTCCATTCTTGACCCAGAGGACCAAAAGTAAATTTGTTTTTGCAGGCCCATCAAAGTCCCCTGAAACTCTTTTCAAGTATATTTCTCCTGAACAAGTGCCAATTCAATATGGTGGCCTAAGTGTAGATTTATGTGACTGCAACCCAGAATTCAGCATGTCTGATCCGGTCACGGAGGTACCTATAAAACCAACCACAAAGCAAACTGTGGAAATCATTATTTATGAGAAATGCACTATCGTGTGGGAGCTGCGAGTAGTGGGCTGGGAGGTCAGCTACAGTGCTGAGTTCAAACCTGATGCAAAAGATGGATATACAGTTATCATACAGAAGGCTACAAAGATGTGCCCAACTGATGAGCCAGTGGTTTCCAATAGCTTTAAAGTTGGTGAACTGGGCAAGATATTGCTTACCATTGACAATTCCACATTGAAAAAGAAGAGGCTTCTGTATAGGTTCAAGATTAAACCCCTCAGCGTTTGA	1665	0.4553	MADEDSKPSISVTETKELGSPKVTAESDSPDVASASAVESDSAAVNTENTDLPPPPPSESLAAEASTVVETEQPPPPPTEDIDVKAKSSDTKEDSVAAQDERSKKLPQNLVSFKEESNLVADLSDSQRNAFEEFKKLVREALDTHQFTSSVPPKTTPVPAETTPAAKEVAKAEGASSESDASTEVQPQHETKLEENPVKGAEEVAKTSEEQVFIWGVPLLKDDRSDVILLKFLRARDFKVKDAFIMIKNTISWRKEFNIDALVNEDLGDDLEKVVFMHGYDREGHPVCYNVYGEFQNKELYQKAFSDEEKRAKFLRWRIQFLERSIRKLDFTPGGVNTIFQINDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMISPFLTQRTKSKFVFAGPSKSPETLFKYISPEQVPIQYGGLSVDLCDCNPEFSMSDPVTEVPIKPTTKQTVEIIIYEKCTIVWELRVVGWEVSYSAEFKPDAKDGYTVIIQKATKMCPTDEPVVSNSFKVGELGKILLTIDNSTLKKKRLLYRFKIKPLSV	554

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci6g1872	554	SUPERFAMILY	CRAL/TRIO domain	274	443	IPR036865	-
	Prci6g1872	554	ProSiteProfiles	GOLD domain profile.	444	549	IPR009038	-
	Prci6g1872	554	Gene3D	-	145	450	IPR036865	-
	Prci6g1872	554	Gene3D	GOLD domain	451	549	-	-
	Prci6g1872	554	SMART	CRAL_TRIO_N_2	225	250	IPR011074	-
	Prci6g1872	554	MobiDBLite	consensus disorder prediction	148	198	-	-
	Prci6g1872	554	CDD	SEC14	270	434	IPR001251	-
	Prci6g1872	554	MobiDBLite	consensus disorder prediction	12	49	-	-
	Prci6g1872	554	MobiDBLite	consensus disorder prediction	1	110	-	-
	Prci6g1872	554	PANTHER	PATELLIN-1	79	551	IPR044834	GO:0008289
	Prci6g1872	554	SMART	sec14_4	269	436	IPR001251	-
	Prci6g1872	554	Pfam	CRAL/TRIO domain	274	433	IPR001251	-
	Prci6g1872	554	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	264	439	IPR001251	-
	Prci6g1872	554	FunFam	SEC14 cytosolic factor family protein	269	449	-	-
	Prci6g1872	554	PRINTS	Cellular retinaldehyde-binding protein signature	228	250	-	-
	Prci6g1872	554	PRINTS	Cellular retinaldehyde-binding protein signature	391	410	-	-
	Prci6g1872	554	MobiDBLite	consensus disorder prediction	83	101	-	-
	Prci6g1872	554	SUPERFAMILY	CRAL/TRIO N-terminal domain	119	265	IPR036273	-
	Prci6g1872	554	Pfam	CRAL/TRIO, N-terminal domain	215	249	IPR011074	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci6g1872	Prci-Chr6	16925356	16927879	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci6g1872	229	428	Acyl Lipid Metabolism Gene Families	AT1G55840	27.962	9.67e-10	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci6g1872	-		-	qsa:O6P43_029974	756.903