Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1062 ATGCGTGCCCCCAACGCTAGAAACCTTTGTACACTGAGTGGCCTTTTCCGTTCTTCAACCTCGAAACTCAAGAATTCTAAGCCACAATCCTATCCTCCAGCTTCATCCATTCATGAAGATGATTTTTCGGAGCTCGATGGTGATTCTCACTCGATCCGCAACGATCTTGAGTTTGAGCGACCCTCTGATTCAGAGAATTTGCCTGACCTGGTATCTAAGCATATTTCTTCTATGTTATCTGATGAAAAGTCAAGTCCAAGAAGTCAAGTTCGAAAGTTTGCAAAATTTGTACCTTCTACACTAGATCCATCCAATTTGAAAGATGATTTTTCAGAACTTGATAGTAAACCTAAGCCTACTATTTTCAAGGACCTTGACTATGCACCACTCTCTTATTCAGAGAATTCACCTAATTCGGTGTCTAAGAAGATTCCTTCCATGCTGTGTGAATCTGATGGAGCGGAGAAAAAGCTTTCAAGAGGTCAAATTCGCTGCCCTTCAATAATGGAATCTTCTCCTCAAGCCTCGTCCATTTTGGAAGATGATTTTTCAGAACTTGACAGCGAATATAATCCTTCAATCTCTGAAGACATTGACTTTTTGCAACCCTCTGTTTTAGATAATTCACCTAAGCTCCACACTGAGCAGATTAATGATATACTGTGCGGTGACTATGGTCAATTGGTCAAGAGATCAGGTGATGATGCGGAAAAATTGGAAATTTCACTAGATGTACCATGCTTTCTTGGTCAATTTGGTGGGAATTTATCGCAGCAACAGAAAGAGAAGGCTCGTGACAGAAAGCAAAAGTGGATTTTTAAACACATGCAGGAAAACCGATTTGACAGGGTACTTCAATTCTTTGCAGATAAAATGGGGGCAAAGGCTACTGTGGAAGTGTTAGGTAAATTGGGAAGAGAAACAGGCATGAAGGAATACAATGCATTAATAGAAGTATGCATAAAAAATGCCAGGAAAACTAATGATGAAGAAGTGGCAATTGAAGAAATGAGCAAGGCTTTTCGCCTTTTTAAACAAATGAGAGAACAAGGTTTTGAACTACGAGAGCAAACGTACAGCCCTCTTCTTGTGTATTTAATTGACATGGGTATGGTTGAAGAATTTCAATTTTTCAGTGAGGTAATCAAAGACGAAAATCCCGTTTCAGTTTCAAGATTGGGTTACTATGAAATGATGTTATGGCTGAGAGTTGGTAACAGAGAAAAGATTCAGGATCTTTGTAACTCTATAGCAGTCAATGATGGTATAGACTCTTCTGGTTTAGGAGAAAGTTATTTATTGGCATTTTGTGAAAGTGATTGGAAGGAGGGGCTTTTACAGCTGTTGGAAATTATAGACATAACAAAGCTTTCATCTACAGAATCTATAGCAGGCATTTTTAAATCATTGGGAAGGCTATGCTTGGAATCATATGCGGAAAGATTCCTTTTAGCTTTCAAATTTTGTGATGATGAAGCAAATAATGTTACAAACTTCATCGCCAGTTATGCTGTTAGCCTACCAAATTTAGCGGTTGAGGATGTCATCTTGAAATTCAAGGATTTGCACCAAGAACTGGAAGTTTCACCTGCATCCTCATCATACGAGAAGCTCGTTATGTATGCCTGTGACTTACTTGAGGTGCATTTAGCTCTTAAGATTGTTCGTGAAATGTGTGAAGCAGGCTTTGCCTTATCTACCGAGGTGTTAAATTCCGTATTACGAAGTGTTGAAGAAACATGTGAATATAATTTGGTCCACTGGATCTATTCCACAATATCTCACTACAGTTTGAAGGCAAATTCTGAAACATTCAGGTGTATGATAAGCTTGTGCACCAGGATGAAAGATTTTGAAAGTGCAGATAAGATGCTTAATGATTTGGAAGAAATGAATGTGAAGCCTACGTCTAGCATGTACAATGCTATTATTGCTGGATATTTTAGAGAGAAAAACATTAGTGATGCTTTAAGGGTCCTTGAGCGCATGAAAGATGCCAATATCAAGCCTGATTCTGGTACTTTCAACCATTTGATTAGCAACTCTAAAACTGAGGAGGATATAACCAAGTATTATGAAGAAATGCAGCAGTCTAACTGCCAACCTACAAAGCAGACTTTTGTGGCCCTTATAACTGCATATGCAACCTGTGGACAGTTGGAGAAGGCAAAACAGGTGGTCTTAGATCCAGCCGTTCCAGCAAAGAGCTTAAATGAAATCAAATGTGCCCTTCTCACGACTCTTGCATCGCATGGGCAATTTTCTGATTCTATTCATATTTATGAGGAAATCAAGGAATCTGGAAACAATCTGGAGCCAAAAGCTGTTATAAGTCTTATTGAGGGACACATCAAATCTGATGGGGAATTAGATAGATTGGTTCTGCTACTTGAAGAGTTGACTGATCCAGACTATTGGGTAGATGGTTGCTTCAGAATTATTATGTTTTGTGTTGAGAACAAGCATTTAAGTCTTGCTGTTGACCTGATCAAGCAACTCAATGATAAAATTCACGACAACGAACTACTCATGGAAGTTCTTTTGGATCAGGTATTTTCTACAATTGCATCTTCAGAGTCCGCACATTTGAAGTTTGGCCTAGACCTTTATTGGCGGATCAGGAAAGTGTTTGGCATTATACCTTCACGGCAATGTCTGGACTTTCTTCTAACTGCTTGTGCCAACGCCAAAGATTTGCGGAATATTCGTAAAATTTGGAAAGAATACCAGCTTGTTGGATACCCTTTTAATGTTTTAAGTTACGTGAGGATGTATCGAGCGCTTTTGGCTGCAGAAGATTTTCCATCTGCCAAATCTATACTCAATAAAATTCCAAGAGATGATCCCGATGTTTGTCGGGTCGTCAAAGAATGTCAAAAAGCATACGATGATCTTATTTCCTTGGATAAACTTGTGAAGAAAATGGATAAGAAAGAAAAGGAGGAAGATTTATTTGACTGA 2961 0.3877 MRAPNARNLCTLSGLFRSSTSKLKNSKPQSYPPASSIHEDDFSELDGDSHSIRNDLEFERPSDSENLPDLVSKHISSMLSDEKSSPRSQVRKFAKFVPSTLDPSNLKDDFSELDSKPKPTIFKDLDYAPLSYSENSPNSVSKKIPSMLCESDGAEKKLSRGQIRCPSIMESSPQASSILEDDFSELDSEYNPSISEDIDFLQPSVLDNSPKLHTEQINDILCGDYGQLVKRSGDDAEKLEISLDVPCFLGQFGGNLSQQQKEKARDRKQKWIFKHMQENRFDRVLQFFADKMGAKATVEVLGKLGRETGMKEYNALIEVCIKNARKTNDEEVAIEEMSKAFRLFKQMREQGFELREQTYSPLLVYLIDMGMVEEFQFFSEVIKDENPVSVSRLGYYEMMLWLRVGNREKIQDLCNSIAVNDGIDSSGLGESYLLAFCESDWKEGLLQLLEIIDITKLSSTESIAGIFKSLGRLCLESYAERFLLAFKFCDDEANNVTNFIASYAVSLPNLAVEDVILKFKDLHQELEVSPASSSYEKLVMYACDLLEVHLALKIVREMCEAGFALSTEVLNSVLRSVEETCEYNLVHWIYSTISHYSLKANSETFRCMISLCTRMKDFESADKMLNDLEEMNVKPTSSMYNAIIAGYFREKNISDALRVLERMKDANIKPDSGTFNHLISNSKTEEDITKYYEEMQQSNCQPTKQTFVALITAYATCGQLEKAKQVVLDPAVPAKSLNEIKCALLTTLASHGQFSDSIHIYEEIKESGNNLEPKAVISLIEGHIKSDGELDRLVLLLEELTDPDYWVDGCFRIIMFCVENKHLSLAVDLIKQLNDKIHDNELLMEVLLDQVFSTIASSESAHLKFGLDLYWRIRKVFGIIPSRQCLDFLLTACANAKDLRNIRKIWKEYQLVGYPFNVLSYVRMYRALLAAEDFPSAKSILNKIPRDDPDVCRVVKECQKAYDDLISLDKLVKKMDKKEKEEDLFD 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1062 986 NCBIfam pentatricopeptide repeat 639 672 IPR002885 -
Prci6g1062 986 NCBIfam pentatricopeptide repeat 604 636 IPR002885 -
Prci6g1062 986 Pfam Pentacotripeptide-repeat region of PRORP 551 697 IPR033443 -
Prci6g1062 986 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Prci6g1062 986 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Prci6g1062 986 Gene3D Tetratricopeptide repeat domain 271 415 IPR011990 GO:0005515
Prci6g1062 986 Gene3D Tetratricopeptide repeat domain 683 808 IPR011990 GO:0005515
Prci6g1062 986 Gene3D Tetratricopeptide repeat domain 811 983 IPR011990 GO:0005515
Prci6g1062 986 Coils Coil 830 850 - -
Prci6g1062 986 Gene3D Tetratricopeptide repeat domain 564 682 IPR011990 GO:0005515
Prci6g1062 986 MobiDBLite consensus disorder prediction 20 68 - -
Prci6g1062 986 Pfam PPR repeat 706 726 IPR002885 -
Prci6g1062 986 PANTHER OS02G0132600 PROTEIN 177 978 - -
Prci6g1062 986 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1062 Prci-Chr6 7411827 7427441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1062 509 947 Glycosyltransferase AT1G05670 19.140 4.16e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g1062 - - pcin:129313091 1902.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g1062 6 7411827 7427441 Prci6g1062 6 7411827 7427441 ECH