Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0522 ATGGCTTCTTTTCCGTCAGAGAACGGTGTTGAAGGAGACGATGAGAGAGAGGAGGACGACGAGGAAGAAGAAGAGGATGAGGAAGAGGAAGAGGAGCCGAGGCTTAAGTACCAAAGAGTGGGAGGCAGCATACCTTCGCTGCTAGCCAGTGATGCGGCGTCTTGTGTCGCTGTTGCTGAGCGGATGATCGCCATTGGCACTCATGGTGGCACCATCCATATCCTTGATTTTCTTGGGAATCAGCAGGTGAAGGAATTTGTTGCTCATGCTGCTGTTGTTAATGACCTTAGCTTTGACCTAGACGGTGACTATATTGGAAGCTGTTCTGATGATGGATCCGTGGTAATAAACAGCCTATTCACTGGTGAGAAAATGAAACTTGAGTATCGTCGTCCAATGAAGGCTATTGCTCTGGACCCAAATTATGCGAGAAAAACATCAATGAGATTTGTTGCAGGTGGTTTAGCTGGCCATTTATATCTTAATTCGAAGACATGGTTAGGCTATCGTGATCAGGTTTTGCACTCTGGTGAGGGTCCAATACATGCTGTGAAGTGGAGAACAAGTCTTGTTGCTTGGGCAAATGATGCTGGAGTGAAGGTTTATGATACAGCCAATGATCAGCGTGTAACATTTATAGAAAAACCCCGAGGGAGCCCACATCCTGAGCTTCTGCTTCCTCACTTGGTTTGGCAGGGCAATGCGCAAAGACCAGAAGTACACATAGTAACATGGAACAATGACGAACTTTCAACAGATGCTCTACCATTACATGGATTTGAACATTTCAAGGCAAATGATTATTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAATGGGCTGCTGGTGATGAACCGCTTTACTATATTGTGTCCCCAAAAGATGTAGTCATTGCAAAGCCAAGGGATACTGAAGATCATATTGCGTGGCTTCTTCAACATGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGTCAAGGAAGGAGTGAACTTCTAGACGAGGTTGGATCCAGGTACCTCGATCATTTAATTGTGGAAAGAAAATATTCTGAAGCAGCTTCTCTGTGTCCCAAGCTGCTGCGAGGATCAGCTTCAGCATGGGAAAGATGGGTTTTCCACTTTGCACACCTTCGTCAACTTCCTGTATTGGTCCCTTATATGCCTACTGAAAACCCTAGACTGCGAGACACTGCTTATGAGGTCGCTCTTGTTGCATTGGCTACAAATCCATCTTTTCACAGGGATCTCTTGTCCATTGTCAAATCCTGGCCATCTGTAATTTACAGTGCGTTGCCTGTTATTTCAGCCATTGAACCTCAGCTCAATACTTCATCCATGACTGATTCACTCAAGGAGGCATTGGCTGAGTTATATGTAATCAACGGGCAATATGGGGAAGCCTTTTCATTATATGCCGATCTTTTGAAACCAGAAATATTTGACTTCATTGACAAACATAATCTACATGAAGCCGTCCGAGAAAAGGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTGCTCTATTTATTCAGAACAGGGACTTTATAAGTTCACCTGAAGTTGTGAAGCAACTTCTAGATGCTGATAATAAGTGTGACTGCAAATATTTTGTACATTTATACCTTCATTCATTATTCGAAGTAAACCAACATGCTGGGAAGGACTTCCATGATATGCAGGTAGAACTTTATGCAGATTATGACCCGAAGATGCTGCTACCATTTCTTCGTAGTAGTCAACACTATACCCTTGAGAAGGCCTATGAAATTTGCATCAAAAGAGATCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGGATGGGAAACTCGAAACAAGCCCTATCTATTATTATTGACAAGTTAGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAACTGATCAAGCAATGCCTGCACAAACCTGAAATGGTGGGCATCCTATTGGAACACACCGTTGGGAATCTTGATCCCCTCTATATAGTAAATAAGGTTCCCAATGGGATGGAAATACCTCGACTTAAGGATCGGTTAGTTAAAATTACCACTGATTACAGGACTGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAGGTGGACTGTGTCAACCTTTTTGTTAAGTATTACAAAGAGGCGAGGCATGGAGTTTATCTGAGTGATGAGGTTGAGCCACGAGATAAAAAGAGTGAAAATCATTCTTCTCAGGTGGTTGAGAATTCTCCAATTCTGAGAAACGTTGAAGCGAAGTCGAAGAACAGGGGAGGAGGAAGATGTTGTATATGTTTTGACCCTTTTTCTATTCAGAATGTATCAGACTCGGTCGTTGTTTTCTTTTGCTGTCATGCTTATCACACAACTTGTCTAATGGATTCCACGGACACTAGCAGTGACAACAAAGAGATTGAAGTCACTTATGGAAAGGCAGAATATGATTATAATGGTTATGTGGATGAAGAAGAACCCGAGATGGATGGTCATCGTATGCGTTGTGTATTATGTACTACTGCTGCCAGTTGA 2577 0.4311 MASFPSENGVEGDDEREEDDEEEEEDEEEEEEPRLKYQRVGGSIPSLLASDAASCVAVAERMIAIGTHGGTIHILDFLGNQQVKEFVAHAAVVNDLSFDLDGDYIGSCSDDGSVVINSLFTGEKMKLEYRRPMKAIALDPNYARKTSMRFVAGGLAGHLYLNSKTWLGYRDQVLHSGEGPIHAVKWRTSLVAWANDAGVKVYDTANDQRVTFIEKPRGSPHPELLLPHLVWQGNAQRPEVHIVTWNNDELSTDALPLHGFEHFKANDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHRDLLSIVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVINGQYGEAFSLYADLLKPEIFDFIDKHNLHEAVREKVVQLMMLDCKRAVALFIQNRDFISSPEVVKQLLDADNKCDCKYFVHLYLHSLFEVNQHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALSIIIDKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGMEIPRLKDRLVKITTDYRTETSLRHGCNDILKVDCVNLFVKYYKEARHGVYLSDEVEPRDKKSENHSSQVVENSPILRNVEAKSKNRGGGRCCICFDPFSIQNVSDSVVVFFCCHAYHTTCLMDSTDTSSDNKEIEVTYGKAEYDYNGYVDEEEPEMDGHRMRCVLCTTAAS 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0522 858 MobiDBLite consensus disorder prediction 11 31 - -
Prci6g0522 858 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 518 665 IPR000547 GO:0006886|GO:0016192
Prci6g0522 858 MobiDBLite consensus disorder prediction 741 760 - -
Prci6g0522 858 SMART WD40_4 79 118 IPR001680 GO:0005515
Prci6g0522 858 SMART WD40_4 167 203 IPR001680 GO:0005515
Prci6g0522 858 Gene3D - 49 271 IPR015943 GO:0005515
Prci6g0522 858 SMART ring_2 778 853 IPR001841 -
Prci6g0522 858 SUPERFAMILY RING/U-box 777 815 - -
Prci6g0522 858 CDD RING-H2_Vps8 776 811 - -
Prci6g0522 858 FunFam Vacuolar protein sorting-associated protein 41 homolog 459 724 - -
Prci6g0522 858 PIRSF Vps41 232 821 IPR016902 GO:0034058|GO:0046907
Prci6g0522 858 PIRSF Vps41 3 235 IPR016902 GO:0034058|GO:0046907
Prci6g0522 858 SMART CLH_2 518 665 IPR000547 GO:0006886|GO:0016192
Prci6g0522 858 MobiDBLite consensus disorder prediction 1 38 - -
Prci6g0522 858 Gene3D Tetratricopeptide repeat domain 459 721 IPR011990 GO:0005515
Prci6g0522 858 PANTHER VACUOLAR PROTEIN SORTING VPS41 233 853 IPR045111 GO:0006623
Prci6g0522 858 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 739 820 IPR013083 -
Prci6g0522 858 SUPERFAMILY WD40 repeat-like 50 216 IPR036322 GO:0005515
Prci6g0522 858 Pfam Region in Clathrin and VPS 521 661 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0522 Prci-Chr6 3407561 3418448 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0522 K20184 - qsa:O6P43_028453 1358.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g0522 6 3407561 3418448 Prci6g0522 6 3407561 3418448 ECH