Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0399 ATGACAAGGGAAATATGTTTGTCTTGTTCTATGCAGGAAGATGAAGAGAAGGTGAAAAAGATTCTGAAAATGAATTCAAGGGAAGGAGTGAATGATGGTCGAACTAGAATTGAACCAAATGATTCTCTTCTCCCTGGTCTTATTGATGATGTTGCCCTCAATTGTCTTGCGTGGGTTAGCAGATCGGATTATGCTTCGCTATCTTGTATAAATAAAAGATACAATAAGCTGATTAAAAGTGGGTATTTATATGGGTTGAGGAAACAGTTGGGACTTGTTGAGCATTGGGTTTATTTGGTGTGTGATCCAAGGGGATGGGAAGCATTTGACACCGTGAAAAAGAAATGGATGGCATTGCCTAAGATACCGTGTGATGAATGCTTCAACCATGCAGACAAGGAGTCCTTGGCTGTGGGCAGTGAACTGTTGGTATTTGGTCGGGAATTGTTGGATTTTGCTATTTGGAAGTATAGCTTGATTTTTCATGGTTGGGTTAAGTGTCAGGGGATGAATCGGCCGCGCTGTTTGTTTGGATCTGGTAGTCTTGGCTCAATTGCCATTGTTGCAGGTGGAAGTGATAAAAATGGAAATGTTCTAAAATCAGTTGAGCTGTATGACTCTTTGTCAGGTGGATGGGAACAGTTACCAAGCATGCACACACCACGTAGATTGTGCTCTGGTTTTTTCATGGATGGCAAATTCTATGTGATCGGTGGAATGTCAAGTCCTACGGTTTCGTTGACCTGTGGAGAGGAGTATAATCTTGAGACGAGAAGTTGGCGGAAAATAGAGGATATGTATCCATTTGTTAATGGGGCTGCTCAGGCACCCCCACTTGTGGCAGTTGTGGACAACCAGTTATTTGCTGTGGAGCATCTAACCAACATGGTGAAGAAGTACAACAAGGTAAAGAATGCCTGGGATGAATTGGGAAGGCTTCCAGTCCGGGCTGATTCTTCTAATGGATGGGGTTTGGCTTTCAAGGCTTGTGGGAAGCACCTTCTGGTCGTGGGTGGTCAGAGAGGTCCTGAAGGTGAAGCTGTTGTGCTGAATTCCTGGTGCCCTGCATCAGGGGTAAAAAATGGCACCTTAGATTGGCAGGTTCTTGCGGTGAAGGAGCATGTTGGGGTGTTTGTGTACAATTGTGCTGTTATGGGTTGTTGA 1164 0.4424 MTREICLSCSMQEDEEKVKKILKMNSREGVNDGRTRIEPNDSLLPGLIDDVALNCLAWVSRSDYASLSCINKRYNKLIKSGYLYGLRKQLGLVEHWVYLVCDPRGWEAFDTVKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELLDFAIWKYSLIFHGWVKCQGMNRPRCLFGSGSLGSIAIVAGGSDKNGNVLKSVELYDSLSGGWEQLPSMHTPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYNLETRSWRKIEDMYPFVNGAAQAPPLVAVVDNQLFAVEHLTNMVKKYNKVKNAWDELGRLPVRADSSNGWGLAFKACGKHLLVVGGQRGPEGEAVVLNSWCPASGVKNGTLDWQVLAVKEHVGVFVYNCAVMGC 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0399 387 FunFam F-box/kelch-repeat protein SKIP11 89 371 - -
Prci6g0399 387 Pfam Kelch motif 173 218 IPR006652 GO:0005515
Prci6g0399 387 Pfam Kelch motif 221 266 IPR006652 GO:0005515
Prci6g0399 387 CDD F-box_AtAFR-like 43 87 - -
Prci6g0399 387 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 38 387 - -
Prci6g0399 387 Gene3D - 93 375 IPR015915 GO:0005515
Prci6g0399 387 SUPERFAMILY Kelch motif 104 344 IPR015915 GO:0005515
Prci6g0399 387 SMART kelc_smart 185 232 IPR006652 GO:0005515
Prci6g0399 387 SMART kelc_smart 233 285 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0399 Prci-Chr6 2562988 2564801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0399 38 264 Miscellaneous Gene Families AT4G33900 26.872 1.63e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0399 - - pcin:129315038 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g0399 6 2562988 2564801 Prci6g0399 6 2562988 2564801 ECH