Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0356 ATGAGTGATGAAGGAGAAAGGACTTGTCCTCTTTGTGCAGAAGAGATGGATTTGACTGATCAGCAGTTGAAGCCATGCAAATGTGGTTATGAGATATGCGTTTGGTGCTGGCATCACATAATGGATATGGCTGAGAAGGATGACACAGAAGGGAGATGCCCTGCATGTCGAACTCCATATGACAAGGAGAAGATTGTAGGGATGGCTGCAAACTGTGAGAGATTGGTAGCAGAAATTAATACTGAAAGGAAGATGAAGAGTCAGAAAGCAAAGTCTAAATCTTCTGAAGGCCGGAAGCAGCTGAGCAGTGTTCGAGTGATTCAGCGGAATCTTGTCTATATAGTTGGATTGCCACTTAATCTGGCAGATGAAGAAATTCTTCAGCGGCGAGAGTATTTTGGTCAGTATGGGAAAGTCTTAAAAGTGTCAATGTCTCGGACAGCAGCTGGTGTCATCCAACAGTTTCCAAACAGTACATGTAGTGTATATATTACTTACTCAAAGGAAGAAGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTCTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAGTATTGTCATGCCTGGCTCCGAAACATGCCTTGCAGCAATCCTGATTGTTTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTCACTAAAGATGAAATAATTTCAGCATACACTAGAGTTCAACAAATTACGGGTGCCACAAATAATATGCAACGGCGGTCAGGGAATGTGTTGCCACCCCCAGTTGATGATTTCATGAACCAATTTGCTGGAAAACCCATTGTGAAAAATGCCACAAATAATTCCTCTAGCACTGTAAGAGGTTCACCTCCGAATGGAAGTTCTGGAAGATCTATAGCTTTAGATCCTGCTGCTGCATGGGGTACGAGAGCTACAAGTTGTGAGCCCTCTTCTGGAGGTTTATTATGTCCTAATGGACCAGCTAAGCCAAAAGCTGATGCTGTTAGTGGCACACTAGCCTTTTCTTCAGCTGTTACAGGTTCAAGCCAGAACTCTTCATTGCACAGTGATGCAACAAAGAGGCCACTGTCAAGTGGTGGAAGTCCTAATAACCTTAGAGTACGAAATGAATCATTAAAACCTGTAAAGCAACTAAATTTCATGGACAATCCGAGTAGTACATGTGAAAAGACTGCTACATCTGATGGTTCTCTTGCACCTGTGAATCGAGAGAGCTTGTTGTCTAATTTACCATTATCCAGAGATGGTGATAGAGGCAGTTGTACTACATCAAATACAACAACAAATTCTGCTGACTTCACTGGGCAGCCATGCAGCTCTGGTCTTGAGGAAGCAACTATTGCTACCAATGAAGAGATTCAGAACCTGTGCTCCAATCTGTCCACTGTTAACATTGATAGAAATGGCCAAAATGAATACTATGGTATGGTCAGATCTAATAGCCCCCCTTCTGATTATATCTTGACAAGGTCTCCTCAACTTCAAGCATCACAACAGCACAAAGATGACAAATTTAGGGATGTTCAATTTTCAAGTGAATCTGGTAAAGCTGCTCCATCTGATTGGGAGCAGTCTGATTGGAAATTGAATTCACAAGCCCAAATAGTATCAGTTACAACTGACTTGGAAGATGATATAGCTTCTTTCGATAATCAAAGGCTCAAAGATCCAGAAGTTGTTTGTCATTCTCCGTACATGCCTAAGTCAACAAGTTTTGTTCATGTCCCACTCCATTCTAATCATAGTCTTATCCAACAAGGGGAACAGTCTCCTGCTATGACTTTTGATTTTGTATCTGCTGATTCTAAGGTTGGGGATGATTCTCTATTGCATCCATCCAGCATATTATGTAATGGTCATCCTGATAAGTTGGTCCGCAGCTGCTCTTCTGATTTGAATAGCACCACTGATTGTACTTCACTTCAGGATATAAGAAATGAACAGTGCATTGAAAGATTATTCATCGAATCAGTTAGTGCTGGAAATGATGTTGCATTGGACAAGGGTGAGAGTAGCATTATTTCAAATATATTGTCCATGGACTTTGATTCTTGGGATGACTCACTAACATCACCTCAGAATTTGGTTAAGTTGCTGGGTGACAACACTGATAACCAGTTTGTTCCTTTAAAAAAATCCAGTTCTTTGAAAGTGCAGAATAATAGTCAATCAAGATTCTCTTTTGCAAGACAGGATGAACCTAAAATCCAAGCATTTAATGCAAATCCATCTCATGGTATTAGCGAGCAATTTCCAAGGAGGGGCTCTTTCATGCAGGATTTTTCTGAAATAGACTTGCATAATGATAGGAAGTTGGGTATGACAAATGGCTTCTCTTCCTGTAAACTTGAGGAATCTGAAAATCTAGGCGGTGGTCACTTTGTTTCTTCTAATAAGCACTCTGCTGTTTCTAGAGCTCAAATTTCTGCTCCTCCAGGATTTTCAGTTCCAAGCAGGCCTCCACCACCAGGTTTTTCTTCTTGCGAGAGAGTGGAACAGGCTTTCAGTTCAGTATCTGGGAATTCATTGCTCGACCCATCCTCGTTGAGAAATTCATATCAGATACCCACAGCTGGAAATATTGGTGGTACAGGGGACATTGAATTAATAGATCCGGCCATTTTGGCTGTTGGCACTGGCAGACTTCAAGGTCCACTAAACAGCCCAGGGTTGGACATCAGATCTAGTTTCTCCCCACAATTAAATTACTTTGAAAATGAGGCCAGACTTCAATTATTGATGCAAAGATCTCTCTCACAACCACAGAACAGATTTTCTGAAATTGGGAGTACTTTTTCTCAGATTGGTGATTCTTATGGCATTTCTTCAAGGTTAGATCAATCACAAGTCAGCAATTTGACCCCCTTTGCTCAGTTGTCCTTACAGCAGTCTAGAAATGCTCTTTTGTCTAATGGCCATTGGGATGGGTGGAATGAAGTGCACAGTGGAAGTAGTCGGGGGGTGGCTGAGCTACTAAGAAATGAAAGACTTGGAATTAACAAGTTATATACAGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGAGATCTTTACAACCGAACTTATGGGATGTGA 3096 0.4115 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRTPYDKEKIVGMAANCERLVAEINTERKMKSQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEEILQRREYFGQYGKVLKVSMSRTAAGVIQQFPNSTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRVQQITGATNNMQRRSGNVLPPPVDDFMNQFAGKPIVKNATNNSSSTVRGSPPNGSSGRSIALDPAAAWGTRATSCEPSSGGLLCPNGPAKPKADAVSGTLAFSSAVTGSSQNSSLHSDATKRPLSSGGSPNNLRVRNESLKPVKQLNFMDNPSSTCEKTATSDGSLAPVNRESLLSNLPLSRDGDRGSCTTSNTTTNSADFTGQPCSSGLEEATIATNEEIQNLCSNLSTVNIDRNGQNEYYGMVRSNSPPSDYILTRSPQLQASQQHKDDKFRDVQFSSESGKAAPSDWEQSDWKLNSQAQIVSVTTDLEDDIASFDNQRLKDPEVVCHSPYMPKSTSFVHVPLHSNHSLIQQGEQSPAMTFDFVSADSKVGDDSLLHPSSILCNGHPDKLVRSCSSDLNSTTDCTSLQDIRNEQCIERLFIESVSAGNDVALDKGESSIISNILSMDFDSWDDSLTSPQNLVKLLGDNTDNQFVPLKKSSSLKVQNNSQSRFSFARQDEPKIQAFNANPSHGISEQFPRRGSFMQDFSEIDLHNDRKLGMTNGFSSCKLEESENLGGGHFVSSNKHSAVSRAQISAPPGFSVPSRPPPPGFSSCERVEQAFSSVSGNSLLDPSSLRNSYQIPTAGNIGGTGDIELIDPAILAVGTGRLQGPLNSPGLDIRSSFSPQLNYFENEARLQLLMQRSLSQPQNRFSEIGSTFSQIGDSYGISSRLDQSQVSNLTPFAQLSLQQSRNALLSNGHWDGWNEVHSGSSRGVAELLRNERLGINKLYTGYDDSKYRMPNSGDLYNRTYGM 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0356 1031 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Prci6g0356 1031 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1025 IPR039780 GO:0004842|GO:0030014
Prci6g0356 1031 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 1 77 - -
Prci6g0356 1031 CDD RRM_CNOT4 105 204 IPR034261 -
Prci6g0356 1031 MobiDBLite consensus disorder prediction 273 294 - -
Prci6g0356 1031 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Prci6g0356 1031 SMART rrm1_1 111 192 IPR000504 GO:0003723
Prci6g0356 1031 Gene3D - 111 192 IPR012677 -
Prci6g0356 1031 MobiDBLite consensus disorder prediction 344 439 - -
Prci6g0356 1031 SUPERFAMILY RING/U-box 3 66 - -
Prci6g0356 1031 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 111 192 - -
Prci6g0356 1031 SMART rrm2_1 111 192 IPR003954 GO:0003676
Prci6g0356 1031 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Prci6g0356 1031 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Prci6g0356 1031 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Prci6g0356 1031 MobiDBLite consensus disorder prediction 489 530 - -
Prci6g0356 1031 CDD mRING-HC-C4C4_CNOT4 8 58 IPR039515 -
Prci6g0356 1031 MobiDBLite consensus disorder prediction 273 298 - -
Prci6g0356 1031 Pfam RING/Ubox like zinc-binding domain 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0356 Prci-Chr6 2208258 2215569 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0356 K10643 - gmx:100813427 1368.6