Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0344 ATGATTAGTGAAAACCTTATTGACTGGAGAAAGATGTATAGAGCACGAGCTGATGGCCTATCCTTCACGAAGGAACCATATATTGAGGATGTTGGGCCACGCAGAATCAAGAGCATGCAATTCACTGCATTATCAGAGTCGGAGATCAGTAAAATTGCTGAGGTTCAAGTTGCAAAAGGTTCATACTACGATGAAACCAGAAAACCAATTGAGAATGGCTTGTTGGATCCCCGCATGGGTCCTGCTAATAAGAGTTGCACATGTGCAACATGCCAAGGGAATTTTGCTGACTGTCCAGGGCATTACGGATACTTAAACCTTGCTCTTCCAGTTTTCAATGCTGGGTATTTTAATGACATTTTCCAAACTTTGAAGTGCATTTGTAAGGGCTGTGCTCGTATACTCCTCAACGAAGATTCTTGTAAAGAACGCTTGAAGAAGATGAGGAGTCCAAAAATAGAGCCTTTGAAGAAGAAAGCAATAGCTAAAAGTCTTATTGATAAATGTAGTACCATGTCAAGTAGTAGCAAAGCAGTGAAATGTCTAAGATGTGGATTTATCAATGGGCAAGTAAAGAAGGCTGGGTCTCTAGGCATTATTCATGATACTTCAAAATGTATTGATGGCCAAGTGGAAGAGTTTCGATCTGCAATTTCTCACACTAAAGAGTCTAAGGCTCCCATCAACTTGACTACTCATGTTCTAAACCCTCACAGAGTTCTTTCCCTCTTTAAAAGATGCTTGATGAGGTCTGGGTTTGACTGTGAATTACTTGATCTTGCAGAACGACCTGAGAAATTCATCATGACAAACATGGCTGTGCCGCCTATAGCGATTCGACCTTCAGTTATAATGGATGGTTCACAGAGCAATGAGAATGATGCGACAGAGAGGCTAAGGCAAATTCAAGCAAATGCGAATCTTCGCCATGAGTTACAGGAAGCTAGTGGGGCATTCAAATGTCTGGATGGCTGGGAGATACTTCAAGTTGAGGTTGGTCAATTCATAAATAGTGATCTGCGTGGTGCCCCATTTTATATGCAACGAGCCAAGCCATTGGCTGGCTTTGTTCAACGCCTTAAAGGAAAGCAGGGGCGTTTTCGTGGAAACTTATCAGGGAAACGTGTTGAGTTCACTGGCAGGACAGTCATTTCACCAGATCCTAATCTGAAAATTTCTGAGGTTGCAATACCAATCCATATGGCTCATATATTGACTTTTCCTGAGTGCGTTTTCCCATCACAACATGAGAAGTTGAGACAGTGTGTGAGAAATGGCCATAAGTATCCTGGGGCAAGGTTACTTAGACATGCTGGTGGTCCAACAAAGGTCTTAAAAGTTTCTTTTCGAAAGCGCCTTGCAGATGAATTGAGGTATGGCGATATTGTTGATCGTCATTTGGAAGATGGAGACATAGTTCTTTTCAATAGACAACCAAGCTTGCACCGGATGTCCATCATGTGTCATAGGGCTAGAGTTATGCCTTGGAGAACTCTGAGGTTCAACGAATCAGGTAACCCATATAATGCTGACTTTGATGGTGATGAGATGAATTTACATGTCCCGCAGACTGAGGAAGCAAGGACAGAGGCTACCTTGTTTTTACAGGTGCAAAACAATTTATGCCCACCAAAGAATGGAACCTGGTTGCCAAGAAAAGATACTTTCTATGATCGTTCTACTTGTGCACTTATTTGCTCGTACATGGGTGATGCCATTGGATATTTGTCGATCTGCCAACTCCGCAATTATAAACCAGTAGAGCTTTGGAGTGGGAAGCAGATATTTAGTGTTTTAGTTCGCTCTCATGCAAATGTGAGGACCTATGTGAGCCTTACTGTTAAGGAGAAGATCTACAGCACAAAGCTTGATGATAGGAAAAGAGAGTTGAAAACAATGTGTCCCAATGATGGGTTTGTTTATTTTCGCAACAGTGAGTTGATCTCTGGGCAACTCGGAAAGGTTACTTTAGGAAATGGAAATAAGGATGGACTTTTCTCAGTGCTACTAAGAGACTATAAAGCACATGCTGCAGCCTCTTGCATGAACCGTCTTGCTAAGTTGAGTGCTCGATGGATAGGCAATCATGGGTTCTCCATAGGCATTGATGATGTCCAACCAAAAGAGGTATTGATCAACAAGAAAGATGAAACAATTTCAGATAATTATAGAAAATGCGATAATTTTATTGAGGCTTTCAACAAAGGAAAGTTAGAACTCAAAGCTGGTTGTGATGCTGCTCAAACATTAGAGAATCTGATAACTGGTGTCTTGAATGGCATTCGAGATACAGCAGGGAAGGTATGCATGCAAACACTGCACTGGAGAAATAGTCCCTTGATCATGTCACAGTGTGGCTCCAAAGGATCTCCTATAAATATCAGCCAAATGGTTGCATGTGTTGGTCAACAGTCAGTTGGGGGTCATCGAGCCCCCAATGGTTTCATGGATCGTAGCCTTCCTCATTTCCCAAAAAAAGCAAAAACACCTGCAGCTAAAGGTTTCGTAGCCAATTCCTTTTATAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACTGCGGTGAAAACTGCGGACACTGGTTATATGTCTCGTAGATTAATAAAGGCTTTGGAGGACTTGTTTGTCCACTATGATAATACTGTAAGAAATGCTGGTAGTTGTGTAGTCCAATTTCGTTATGGAGATGATGGCATGGATCCAGCTGGCATGGAAGGGAAAAATGGAAAACCTTTGAATTTTGAGCGGCTGTTTTTGAGAAGCAAGGCTATATGTCCCTGTGGTGGAGATGATGAAATCCTATCCTCCTCTGATGCGTGTAAAGCAGTGCAAGACAAACTGTCAAAAGCTGGTATGTTGGGGGAAAAGGGGGACTCAGAGGATGATCTAAGTTCTGATGTGGGTTGCTCTGCTGACTTCGTCAGCTCTCTGCAATCCTTCATCAGAGATAACATCGGAGTCTTAGCAGAAACAGATGAAACTTCTGCCAATTATGACACTAGAAATCAGAAAAAATTCATTCAGAGGATATCTGGTATTACTAGTAGACAGCTAGAGGTTTTCCTGGATATATGTCTTTCTCGATATCATTCAAAAAGAATTGAGGCTGGAACTCCAATTGGTGCCATTGGAGCTCAAAGTATTGGAGAGCCTGGGACACAGATGACTCTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAATGTTACTCTTGGAGTTCCACGTATCAAAGAAATAATAAATGGTGCCAAAAGAATCAGTACACCCATCATCACTGCAATACTTGAGAGTGATGATAATGCTAATACTGCGAGGATGGTAAAAGGTCGCATTGAGAAAACAAACTTGGGCCAGATAGCAAAGGGCATAAAAATTGTGATGACGTCAAGATTAGCATCAATTGTCATCACGCTCGACATGGAAAGAATCCAAGATGCACAATTGAATATAGACGCTAATATTGTGAAGGAATCAATTTTGCAAGCTCCAAAAATGAAATTGAAGCCAGAGCACATTAAGGTTTTGGATATCAAAAAGCTTGAAGTTGTACCACAGGATGCAGATAGAAGTAAAATCAATTTTCAACTTAACCATCTAAAAAATTTGCTTCCATCAGTTGTCGTAAAGGGAATTAAGACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGTGATAAAGATGGAGAAGTTCAAATTATTGGTAGAAGGCACGGGCCTCCAAGAGGTTATGGGCATTGAAGGGGTTGATGGACGTAAAACTCTTAGTAATCATATCATTGAAGTTGAGCAGACTCTAGGAATTGAAGCAGCTAGAAAGTGCATCATTGAAGAGATAAAGTTTACAATGGGAAGCCATGGAATGAGCATAGATGCACGCCATATGATGCTTTTGGCCGATGTGATGACCTTCCGGGGCGAAGTCCTTGGAATAACAAGATTTGGAATCCAAAAGATGGACAAGAGTGTATTAATGCTAGCATCATTCGAGAAGACCGCAGATCACCTTTTCAATGCTTCTGTGCATGGGAGGGATGATCAGATTGAAGGAGTAACTGAGTGCATAATCATGGGCATACCAATTCAGATAGGCACTGGAATGATCAAAGTCAAACAAAGGTGA 4158 0.4149 MISENLIDWRKMYRARADGLSFTKEPYIEDVGPRRIKSMQFTALSESEISKIAEVQVAKGSYYDETRKPIENGLLDPRMGPANKSCTCATCQGNFADCPGHYGYLNLALPVFNAGYFNDIFQTLKCICKGCARILLNEDSCKERLKKMRSPKIEPLKKKAIAKSLIDKCSTMSSSSKAVKCLRCGFINGQVKKAGSLGIIHDTSKCIDGQVEEFRSAISHTKESKAPINLTTHVLNPHRVLSLFKRCLMRSGFDCELLDLAERPEKFIMTNMAVPPIAIRPSVIMDGSQSNENDATERLRQXIQANANLRHELQEASGAFKCLDGWEILQVEVGQFINSDLRGAPFYMQRAKPLAGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKISEVAIPIHMAHILTFPECVFPSQHEKLRQCVRNGLXKYPGARLLRHAGGPTKVLKVSFRKRLADELRYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVMPWRTLRFNESVXNPYNADFDGDEMNLHVPQTEEARTEATLFLQVQNNLCPPKNGNXWLPRKDTFYDRSTCALICSYMGDAIGYLSICQLRNYKPVELWSGKQIFSVLVRSHANVRTYVSLTVKEKIYSTKLDDRKRELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEVLINKKDETISDNYRKCDNFIEAFNKGKLELKAGCDAAQTLENLITGVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGHRAPNGFMDRSLPHFPKKAKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLFVHYDNTVRNAGSCVVQFRYGDDGMDPAGMEGKNGKPLNFERLFLRSKAICPCGGDDEILSSSDACKAVQDKLSKAGMLGEKGDSEDDLSSDVGCSADFVSSLQSFIRDNIGVLAETDETSANYDTRNQKKFIQRISGITSRQLEVFLDICLSRYHSKRIEAGTPIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITAILESDDNANTARMVKGRIEKTNLGQIAKGIKIVMTSRLASIVITLDMERIQDAQLNIDANIVKESILQAPKMKLKPEHIKVLDIKKLEVVPQDADRSKINFQLNHLKNLLPSVVVKGIKTAERVVISKEEDKVIKMEKFKLLVEGTGLQEVMGIEGVDGRKTLSNHIIEVEQTLGIEAARKCIIEEIKFTMGSHGMSIDARHMMLLADVMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVHGRDDQIEGVTECIIMGIPIQIGTGMIKVKQR 1389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0344 1389 CDD RNAP_III_Rpc1_C 1042 1384 IPR035698 -
Prci6g0344 1389 FunFam DNA-directed RNA polymerase subunit 27 149 - -
Prci6g0344 1389 Pfam RNA polymerase Rpb1, domain 5 847 1339 IPR007081 GO:0003677|GO:0003899|GO:0006351
Prci6g0344 1389 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 28 1386 - -
Prci6g0344 1389 Coils Coil 292 301 - -
Prci6g0344 1389 Coils Coil 303 319 - -
Prci6g0344 1389 Pfam RNA polymerase Rpb1, domain 4 735 840 IPR007083 GO:0003677|GO:0003899|GO:0006351
Prci6g0344 1389 Gene3D - 827 885 - -
Prci6g0344 1389 Gene3D - 365 549 - -
Prci6g0344 1389 Gene3D - 886 937 - -
Prci6g0344 1389 PANTHER DNA-DIRECTED RNA POLYMERASE 40 1388 IPR045867 GO:0003899|GO:0006351
Prci6g0344 1389 FunFam DNA-directed RNA polymerase subunit 1339 1384 - -
Prci6g0344 1389 Gene3D - 1337 1389 - -
Prci6g0344 1389 Pfam RNA polymerase Rpb1, domain 2 374 538 IPR000722 GO:0003677|GO:0003899|GO:0006351
Prci6g0344 1389 Gene3D RNA polymerase II, clamp domain 26 152 IPR044893 -
Prci6g0344 1389 Pfam RNA polymerase Rpb1, domain 1 34 372 IPR007080 GO:0003677|GO:0003899|GO:0006351
Prci6g0344 1389 Gene3D RNA polymerase Rpb1, domain 3 550 708 IPR042102 -
Prci6g0344 1389 SMART rpolaneu7 265 572 IPR006592 GO:0003677|GO:0003899|GO:0006351
Prci6g0344 1389 Gene3D RNA polymerase ii 407 467 - -
Prci6g0344 1389 Pfam RNA polymerase Rpb1, domain 3 550 709 IPR007066 GO:0003677|GO:0003899|GO:0006351
Prci6g0344 1389 FunFam DNA-directed RNA polymerase II subunit RPB1 452 547 - -
Prci6g0344 1389 Gene3D - 709 826 IPR038120 -
Prci6g0344 1389 CDD RNAP_III_RPC1_N 44 897 IPR035697 -
Prci6g0344 1389 FunFam DNA-directed RNA polymerase subunit 710 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0344 Prci-Chr6 2055015 2075523 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0344 K03018 - qsa:O6P43_028309 2125.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g0344 6 2055015 2075523 Prci6g0344 6 2055015 2075523 ECH