Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0338 ATGTCGGGTTTGCTTAATTCTTCTCTGAACGGATCTGCTTCAAATCTTCCAGAAAGTGCTGGGAGGTCATTTGCCACGTCATTTTCTGGCCAGTCTGGTGCTGCCTCCCCAGTTTTCCATCATGGTGGGGCTATCCAGGGATTGCACGGCATTCATGGCAGCTTTAATGTTCCCAACATGCCAGGTACACTTGCATCAAGAAATTCAACAATAAATAGCATCCCATCTGGAGGGGTTCAACAACCTACTGGAAGCCTTTCTAGTGGAAGATTTGCATCAAATAATCTTCCTGTTGCTTTGTCTCAGCTAACTCATGGAAGCTCTCATGGACATTCGGGAGTAACAAACAGAGGAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTTCCCGAATTCCAAGTTCTATGGGCAACATGGTTGGTGGAGGGAACATTGGGAGGAGCATTAGCTCTGCTGGAGGATTGTCTGTGCCTGGTCTTGCTTCTCGTCTAAATTTAAGTTCAAACGGCGGATCTGGTGGTTTAAGTGTGCAAGGACAGAACCGGTTGCTGAGTGGCATGCTTCCACAAGGATCACCCCAAGTTATTTCAGTGCTAGGAAATTCCTATCCTAGTGCTGGAGGTCCCCTTACCCAAAGCCATGTTCAAGCAGTAAATAATTTGAACTCAATGGGGATGTTGAATGATATGAATTCGAATGACAGCTCCCCTTTTGACATCAATGACTTCCCTCAGTTGACAAGTCGGCCCAATTCTGCTGGAGGGCCCCAAGGACAGTTGGGTTCTTTACGAAAACAGGGTCTTGGAGTTAGTCCCATTGTCCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTGCCAGGATTTAAAGGTGGCAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGAGAATGCTGTGTCCATGATGCAATCTCAGCATTTTTCTATGGGAAGGTCTTCTGGTTTCAACTTAGGGGGGACATACATGTCACATCGGTCACAGCAACAGCAGCATGCTCCTTCTGTCAGTAGTGTTGGCGTCTCCTTTTCATCTGCAAACAATCAGGAACTTCTCCATCTGCACGGGTCAGATATATTCCAATCATCGCATTCAACCTATCATTCCCAGACCAGTGGACCCTCTGGCATTGGATTAAGGTCTCTAAATTCTCCAAATACTGTTTCTGGTATGGGATCGTATGACCAGCTTATCCAGCAATACCAACAGCACTCGAGCCAGCCCCAGTCCCAGTTTCGTCTTCAACAAATGTCAGCTGCGAATCAGTCTTTTAGGGATCAAGGGATCAAATCCATGCAAGCTTCCCAATCGACACCAGATCCATTTGGTTTGCTTGGCTTGTTAAGTGTGATCAGGATGAGTGATCCGGATTTGACATCTCTTGCACTTGGAATTGATCTTACAACACTTGGGTTGAATTTAAATTCATCAGAAAATCTACACAAGACTTTTGGATCTCCATGGTCTGATGAACCAGCTAAGGGCGATCCAGAGTTCACAGTGCCACAGTGTTATTATGCTAAACAGCCACCTGCCCTGCATCAAGGCTATTTTTCAAAGTTTACAGCGGAGACTTTGTTTTACATATTTTACAGCATGCCCAAAGATGAAGCTCAATTATATGCCGCAAATGAACTATATAATAGAGGCTGGTTTTATCACAAAGAACTTCATTTATGGTTGATAAGAGTACCTAACATGGAGCCACTTGTTAAAACAAACACGTATGAGAGGGGATCTTATCACTGCTTTGATCCGAGCACATTTGAAACGATTCGTAAGGATAATTTTGTTGTTTATTATGAATTGATGGAAAAACCCACCTCTGCCTCCGCATTGAGGGGGAAGGGAAACTCGTGA 1908 0.4434 MSGLLNSSLNGSASNLPESAGRSFATSFSGQSGAASPVFHHGGAIQGLHGIHGSFNVPNMPGTLASRNSTINSIPSGGVQQPTGSLSSGRFASNNLPVALSQLTHGSSHGHSGVTNRGGLGVSPILGNAGSRIPSSMGNMVGGGNIGRSISSAGGLSVPGLASRLNLSSNGGSGGLSVQGQNRLLSGMLPQGSPQVISVLGNSYPSAGGPLTQSHVQAVNNLNSMGMLNDMNSNDSSPFDINDFPQLTSRPNSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHENAVSMMQSQHFSMGRSSGFNLGGTYMSHRSQQQQHAPSVSSVGVSFSSANNQELLHLHGSDIFQSSHSTYHSQTSGPSGIGLRSLNSPNTVSGMGSYDQLIQQYQQHSSQPQSQFRLQQMSAANQSFRDQGIKSMQASQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTAETLFYIFYSMPKDEAQLYAANELYNRGWFYHKELHLWLIRVPNMEPLVKTNTYERGSYHCFDPSTFETIRKDNFVVYYELMEKPTSASALRGKGNS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0338 635 Pfam NOT2 / NOT3 / NOT5 family 498 618 IPR007282 GO:0006355
Prci6g0338 635 MobiDBLite consensus disorder prediction 66 90 - -
Prci6g0338 635 PANTHER CCR4 NOT-RELATED 48 622 IPR040168 GO:0030015
Prci6g0338 635 MobiDBLite consensus disorder prediction 379 400 - -
Prci6g0338 635 FunFam probable NOT transcription complex subunit VIP2 isoform X1 448 629 - -
Prci6g0338 635 MobiDBLite consensus disorder prediction 1 27 - -
Prci6g0338 635 Gene3D - 448 632 IPR038635 -
Prci6g0338 635 MobiDBLite consensus disorder prediction 229 260 - -
Prci6g0338 635 MobiDBLite consensus disorder prediction 229 265 - -
Prci6g0338 635 MobiDBLite consensus disorder prediction 416 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0338 Prci-Chr6 1963833 1970463 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0338 K12605 - qsa:O6P43_028301 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g0338 6 1963833 1970463 Prci6g0338 6 1963833 1970463 ECH