Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci6g0297 | ATGGCACCCAAAGCCGAGAAGAAGCCCGCGGAGAAGAAGCCCGCTGAAGAGAAGAAATCGACGGTGGCCGAGAAAGCTCCGCCGGCGGAGAAGAAGCCCAAGGCCGGAAAGAAGCTGCCGAAGGAGGGCGGGGCTGCTGCTGGAGACAAGAAGAAGAAGAGGAGCAAGAAGAGCATCGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTCCACCCGGACATTGGGATCTCCAGCAAGGCAATGGGTATCATGAACAGCTTCATCAACGACATCTTTGAGAAACTGGCGCAGGAGGCATCTAGGCTTGCTCGTTACAATAAGAAGCCCACAATTACCTCTAGGGAAATCCAGACGGCGGTGAGGCTGGTGTTACCTGGAGAACTTGCTAAGCATGCTGTTTCGGAAGGCACCAAAGCGGTGACCAAATTCACCAGTTCTTAA | 450 | 0.5311 | MAPKAEKKPAEKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGGAAAGDKKKKRSKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS | 149 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci6g0297 | 149 | Gene3D | Histone, subunit A | 20 | 149 | IPR009072 | GO:0046982 | |
| Prci6g0297 | 149 | PANTHER | HISTONE H2B | 10 | 148 | IPR000558 | GO:0000786|GO:0003677|GO:0030527 | |
| Prci6g0297 | 149 | ProSitePatterns | Histone H2B signature. | 117 | 139 | IPR000558 | GO:0000786|GO:0003677|GO:0030527 | |
| Prci6g0297 | 149 | FunFam | Histone H2B | 16 | 149 | - | - | |
| Prci6g0297 | 149 | Pfam | Core histone H2A/H2B/H3/H4 | 2 | 125 | IPR007125 | GO:0003677 | |
| Prci6g0297 | 149 | SMART | h2b3 | 52 | 148 | IPR000558 | GO:0000786|GO:0003677|GO:0030527 | |
| Prci6g0297 | 149 | SUPERFAMILY | Histone-fold | 33 | 149 | IPR009072 | GO:0046982 | |
| Prci6g0297 | 149 | PRINTS | Histone H2B signature | 103 | 120 | IPR000558 | GO:0000786|GO:0003677|GO:0030527 | |
| Prci6g0297 | 149 | PRINTS | Histone H2B signature | 62 | 80 | IPR000558 | GO:0000786|GO:0003677|GO:0030527 | |
| Prci6g0297 | 149 | PRINTS | Histone H2B signature | 120 | 133 | IPR000558 | GO:0000786|GO:0003677|GO:0030527 | |
| Prci6g0297 | 149 | PRINTS | Histone H2B signature | 133 | 146 | IPR000558 | GO:0000786|GO:0003677|GO:0030527 | |
| Prci6g0297 | 149 | PRINTS | Histone H2B signature | 81 | 101 | IPR000558 | GO:0000786|GO:0003677|GO:0030527 | |
| Prci6g0297 | 149 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci6g0297 | Prci-Chr6 | 1705862 | 1706678 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci6g0297 | K11252 | - | qsa:O6P43_000240 | 214.542 |