LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci6g0198	ATGGTGCAATATAACTTCAAGAAAATAACTGTGGTGCCTAATGGGAAGGACTTCATTGACATTATTCTCTCTCGCACTCAACGTCAAACACCAACTGTTGTGCATAAAGGATATAAGATTTCCCGCCTCCGTCAATTTTACATGCGCAAAGTAAAGTATACCCAGCAAAATTTCCATGAAAAACTCTCTACTATCATTGATGAGTTCCCTCGGCTTGATGATATTCACCCCTTCTATGGTGATCTCCTTCATGTACTCTACAACAAGGACCATTACAAGCTTGCGCTTGGACAAGTCAATACTGCTAGAAACCTTATTGGGAAGATTTGTAAGGACTACGTGAAGTTACTGAAGTATGGTGATTCACTGTATAGATGCAAATGTCTGAAGGTTGCTGCTCTTGGCCGCATGTGCACTGTGATTAAGAGGATTGGCCCAAGTTTGGCTTATCTTGAGCAGGTGAGACAGCACATGGCAAGACTCCCGTCTATAGATCCAAATACGAGGACCATCTTGATTTGTGGTTACCCTAATGTTGGCAAGAGCTCATTCATTAACAAAATTACAAGAGCTGATGTGGATGTGCAGCCCTATGCTTTCACTACTAAGTCACTTTTTGTTGGTCATACAGACTACAAATACCTAAGGTACCAAGTAATTGATACGCCAGGGATTCTGGACCGGCCTTTTGAAGATCGAAACATTATTGAGATGTGCAGCATTACTGCCCTTGCTCATTTGCGAGCTGCTATATTGTTTTTCTTGGACATATCTGGATCTTGTGGTTATAGTATTGCACAACAGGCAGCTCTATTTCACGGTATTAAGTCTCTATTTATGAACAAGCCGTTAATAGTAGTCTGCAATAAAACTGATTTGCAGCCAATGGAAGGGGTATCGGAGGAAGACAAGAAGTTGATCATGGGTATGAAAGCTGAAGCCTTGAAGACTCTGGTTGGTCAAGGAGGGGAGGCTACAAATGATGAAGGTGTGTTGTTGACCATGAGCACTTTGACTGAAGATGGGGTAATTGCTGTAAAAAATGCAGCGTGTGAAAGATTGTTAAATCAAAGGGTGGAGATAAAGATGAAGTCCAAAAAGATGAATGACTGCTTGAACAGATTTCATGTTGCAGTGCCAAAACCACGTGACCAGAAGGAAAGGCCACCATGTATTCCTCCAGCAGTCTTAGAAGCCAAGGCCAGGCAAGCTGCAGAAAAGGAGAAGAGAAAAACGGAAAAGAATCTGGAAGACGAGAATGGTGGTGCAGGTGTATACTCAGCAAACTTGCGAAAGAACTACATTTTAGCTAATGATGAATGGAAAGAAGATATACTGCCGGAAATTTTGGATGGACATAATGTGTATGATTTCATTGATCCTGATATCTTGCATAGGCTTGAAGAATTGGAAAGGGAAGACGGTCTAAGACAGGCTGAGGAGTTAGATGATGATTTTGAGATTGATGGAAATGAGTTGACTCCAGAGGAACAGGAAGCTTTAGCTGCAATAAGAAAAAAGAAAAGCTTGCTCATCCAAGAGCATAGAAAGAAAAAGAGTACTGCAGAGAGCAGGCCAGTTGTTCCGAGAAAATATGACAAGGACAGGAAGTTTACCACAAAAAGAATGGGAAGGCAGCTGTCATCTTTGGGGCTTGATCCCTCTTTGGCAATTGACAGAGCTCGCAGCAGATCTGTTTCTAGGAGAGGTAGGAAAAGGGAAAGATCTCCCGAAAGAAGAGGTGCTGATGGTGCAGATGTGATGGATATGGATGTAGACTCATCCAGCAAGAAGTTGCGTACTAGATCTAGATCAAGGTCCAGGTCAGTTTCACGTCCGCCAACTGAATTTGTGCCTGGTGAGGGCTTGAAGGATTCTGCTCAAAAGATCAAGGCAGTAAAACTTGCAAAGAAATCTGTCAAGAAGAGGAACAAGGATGCTCGTCGTGGAGAAGCTGATAGAGTTATTCCTACTCTGAAGCCCAAACACTTGTTTTCTGGGAAGCGCTCTATTGGAAAAACCCAAAGACGGTGA	2034	0.4258	MVQYNFKKITVVPNGKDFIDIILSRTQRQTPTVVHKGYKISRLRQFYMRKVKYTQQNFHEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQVNTARNLIGKICKDYVKLLKYGDSLYRCKCLKVAALGRMCTVIKRIGPSLAYLEQVRQHMARLPSIDPNTRTILICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFFLDISGSCGYSIAQQAALFHGIKSLFMNKPLIVVCNKTDLQPMEGVSEEDKKLIMGMKAEALKTLVGQGGEATNDEGVLLTMSTLTEDGVIAVKNAACERLLNQRVEIKMKSKKMNDCLNRFHVAVPKPRDQKERPPCIPPAVLEAKARQAAEKEKRKTEKNLEDENGGAGVYSANLRKNYILANDEWKEDILPEILDGHNVYDFIDPDILHRLEELEREDGLRQAEELDDDFEIDGNELTPEEQEALAAIRKKKSLLIQEHRKKKSTAESRPVVPRKYDKDRKFTTKRMGRQLSSLGLDPSLAIDRARSRSVSRRGRKRERSPERRGADGADVMDMDVDSSSKKLRTRSRSRSRSVSRPPTEFVPGEGLKDSAQKIKAVKLAKKSVKKRNKDARRGEADRVIPTLKPKHLFSGKRSIGKTQRR	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci6g0198	677	CDD	NOG	169	355	-	-
	Prci6g0198	677	PANTHER	NUCLEOLAR GTP-BINDING PROTEIN 1	3	509	-	-
	Prci6g0198	677	Pfam	Nucleolar GTP-binding protein 1 (NOG1)	236	292	IPR010674	GO:0005525
	Prci6g0198	677	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	48	307	IPR027417	-
	Prci6g0198	677	FunFam	Nucleolar GTP-binding protein 1	162	374	-	-
	Prci6g0198	677	Gene3D	-	3	161	-	-
	Prci6g0198	677	MobiDBLite	consensus disorder prediction	576	600	-	-
	Prci6g0198	677	Pfam	NOGCT (NUC087) domain	410	463	IPR012973	-
	Prci6g0198	677	Pfam	NOG1 N-terminal helical domain	6	165	IPR041623	-
	Prci6g0198	677	ProSiteProfiles	OBG-type guanine nucleotide-binding (G) domain profile.	169	355	IPR031167	GO:0005525
	Prci6g0198	677	Coils	Coil	397	422	-	-
	Prci6g0198	677	PIRSF	NOG1	1	677	IPR024926	-
	Prci6g0198	677	MobiDBLite	consensus disorder prediction	515	542	-	-
	Prci6g0198	677	FunFam	Nucleolar GTP-binding protein 1	3	161	-	-
	Prci6g0198	677	MobiDBLite	consensus disorder prediction	513	677	-	-
	Prci6g0198	677	PRINTS	GTP1/OBG GTP-binding protein family signature	171	191	IPR006073	GO:0005525
	Prci6g0198	677	PRINTS	GTP1/OBG GTP-binding protein family signature	219	234	IPR006073	GO:0005525
	Prci6g0198	677	PRINTS	GTP1/OBG GTP-binding protein family signature	192	210	IPR006073	GO:0005525
	Prci6g0198	677	Gene3D	-	162	374	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci6g0198	Prci-Chr6	1083072	1086565	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci6g0198	K06943		-	jre:108998713	1155.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Prci6g0198	6	1083072	1086565	Prci6g0198	6	1083072	1086565	ECH