Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1727 ATGCTAGAAGAACTTGGAAGTCTGGACGTAGAAGAAGAAGAAAATGAGGTCGAGCTTTCTGAGATCCCTTCATGGAATAGCGAACGTGGTGCCAAAGTTCTTGTGAATGTAGATAGCTTTGGTGCTGTTGGAAATGGAGAATCTGATGATACCCAGGCTTTCAAAAAAGCGTGGGATGTAGCATGCTCTACTCCAAAATCTGTTTTCTTAGTTCCTCAAGGACGCCGTTACCTCATTAATGCAACGAGATTCAAAGGTCCTTGTGCAGACAAGCTAATTATCCAGATTGATGGAACAATTATAGCACCGGATGAGCCAAAGAACTGGGATCCAAATTTTCCACGGACTTGGCTTGATTTTTCCAAGTTAGATAAAGCTGTTTTTCAGGGACATGGAGTTATTGATGGCTCAGGAAGTAAATGGTGGGCAGCATCTTGCAAGAAAAACAAGTCAAATCCCTGCAAAGTTGCCCCAACAGCATTAACCATTGATTCTAGCTCAGCTATAAGGGTGAGAGGGCTAACTATCCAGAATAGCCAGCAAATGAATTTTGTCATATCCCGATGTGATGCGGTTCGAATTAATGGTGTGAAAGTGTCTGCACCAGGAGACAGCCCCAACACTGATGGAATTCACATAAGTGAATCAACAAATGTTGTGCTCCAAAACAGCAGAATTGGAACAGGGGATGATTGTGTGTCAATTGTCAATGCTAGCTCTAATATTAAAATGAAGAGGATCTATTGTGGACCAGGACATGGAATTAGCATTGGAAGCCTTGGGAAGGACAACTCCGCTGGCATAGTCACTAAGGTGATTCTGGATACAGCAGTTCTTAAGGAAACTACCAATGGTGTCAGGATTAAAACTTGGCAGGGAGGTTCTGGTTATGTTCGTGGGGTACGATTTCAGAATGTGAGGATGGATAACGTATCAAACCCCATAATTATAGATCAGTTCTACTGTGACTCTCCAACGACTTGTCAAATCCAGGAATCAGCTGTGAACATAAGCGAGATCATATATCAGAACATCAGTGGGACAACAAAGAGCGCGAAGGCCATTAAATTTGACTGCAGCGACACGGTTCCATGTAGCAGCTTAGTGCTCAGCAACGTTGACTTGGAGAAAGAGGATGGCACAGTGGAGACATACTGTCATTCTGCTCAAGGCTTTGGATGTGGGGTGGTTCATCCTTCTGCAGATTGCCTTAATTCCGATGACAAGATTGCAGAACCAGTTAAAGAAGATATTCGTCACAGTGAAATATGA 1272 0.4316 MLEELGSLDVEEEENEVELSEIPSWNSERGAKVLVNVDSFGAVGNGESDDTQAFKKAWDVACSTPKSVFLVPQGRRYLINATRFKGPCADKLIIQIDGTIIAPDEPKNWDPNFPRTWLDFSKLDKAVFQGHGVIDGSGSKWWAASCKKNKSNPCKVAPTALTIDSSSAIRVRGLTIQNSQQMNFVISRCDAVRINGVKVSAPGDSPNTDGIHISESTNVVLQNSRIGTGDDCVSIVNASSNIKMKRIYCGPGHGISIGSLGKDNSAGIVTKVILDTAVLKETTNGVRIKTWQGGSGYVRGVRFQNVRMDNVSNPIIIDQFYCDSPTTCQIQESAVNISEIIYQNISGTTKSAKAIKFDCSDTVPCSSLVLSNVDLEKEDGTVETYCHSAQGFGCGVVHPSADCLNSDDKIAEPVKEDIRHSEI 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1727 423 MobiDBLite consensus disorder prediction 1 21 - -
Prci5g1727 423 SUPERFAMILY Pectin lyase-like 31 404 IPR011050 -
Prci5g1727 423 FunFam Pectin lyase-like superfamily protein 23 407 - -
Prci5g1727 423 PANTHER - 32 391 - -
Prci5g1727 423 Gene3D - 24 421 IPR012334 -
Prci5g1727 423 ProSitePatterns Polygalacturonase active site. 246 259 IPR000743 GO:0004650|GO:0005975
Prci5g1727 423 MobiDBLite consensus disorder prediction 1 19 - -
Prci5g1727 423 Pfam Glycosyl hydrolases family 28 66 387 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1727 Prci-Chr5 35695137 35699487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1727 23 408 Glycoside Hydrolase AT1G23460 75.907 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1727 - - pvu:PHAVU_003G061700g 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g1727 5 35695137 35699487 Prci5g1727 5 35695137 35699487 ECH