Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1626 ATGAGACTCCATCTGTTCTTCTTCGCAATTTGTCTCTACCTCTCTGTCTCTTTCACGCCCATTTCAGCTCGATTGTTCCCTAATGTTTCATCCATACCTCCTTGGCTTACCAAAAACGTGCCTCCCGGCGCCTGGGATGCCTTCCGGAACTTCACTGGCTGCCGTCCAGGGAATAGCTACGACGGTTTGGGTAAACTCAAGAAGTACTTCAACCACTTCGGCTACATCCCTACCACCCCTTCCAACTTCACCGACGACTTCGACGACGCCCTTGAATCAGCCATTAAAACTTACCAGAAGAACTTCAATCTCAACGTCACCGGCGAGCTCGACGCTGACACTCTTCAGCAGATTGTTCGTCCGCGATGCGGCGTCGCTGATATAATCAACGGCACCAGCACCATGAATTCCGGCGAGGAGAATACCTCCGCCGCGAGTAACGATTTACACTTCCACACCGTTTCCCACTACACCTTCTTCCCCGGGACTCCGCGGTGGCCCGCCGGCAGCCAGAGTTTGACGTACGCTTTCTTGCCCGACAACGACCTGACGGACAACGTGAAGAGCGTGTTCGCCACCGCCTTTGATCGATGGTCCGAGGTCACGACGCTGACTTTCACGGAGGCGTCATCGTATCAATCGGCGGACATCAGGATAGCGTTCTACTCTGGGGACCACGGAGACGGAGAGCCATTCGACGGACCTTTGGGGACTCTGGCCCACGCGTTTTCACCGACGAACGGGAGATTCCATCTGGACGGTCAAGAGAACTGGGTGGTATCCGGTGATGTGGCGCAATCGTCGCTGTCGACGGCGGTGGATCTGGAATCTGTAGCAGTCCACGAGATCGGGCACTTGTTAGGATTGGGACACTCATCAGTGGAGGAGGCGATCATGTACCCGACGATATCGTCGAGGACGAGGAAGGTGACTCTGGCGGATGATGATATTCAGGGGATCCAACAGCTTTATGGATCGAACCCTAATTACAACGGCTCCACCACGGTGACGACTTCTCAGGAGAACGATTCCAGCCATGGCGGACGGCGACTCAGTGTGGTGGAGTCAACGCGGGGGCTCCTCCTTTTGGTAGCCGTTGGATTAGCCCATTTGATTTTGTAG 1122 0.5499 MRLHLFFFAICLYLSVSFTPISARLFPNVSSIPPWLTKNVPPGAWDAFRNFTGCRPGNSYDGLGKLKKYFNHFGYIPTTPSNFTDDFDDALESAIKTYQKNFNLNVTGELDADTLQQIVRPRCGVADIINGTSTMNSGEENTSAASNDLHFHTVSHYTFFPGTPRWPAGSQSLTYAFLPDNDLTDNVKSVFATAFDRWSEVTTLTFTEASSYQSADIRIAFYSGDHGDGEPFDGPLGTLAHAFSPTNGRFHLDGQENWVVSGDVAQSSLSTAVDLESVAVHEIGHLLGLGHSSVEEAIMYPTISSRTRKVTLADDDIQGIQQLYGSNPNYNGSTTVTTSQENDSSHGGRRLSVVESTRGLLLLVAVGLAHLIL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1626 373 PANTHER MATRIX METALLOPROTEINASE 43 334 - -
Prci5g1626 373 SMART col_5 162 326 IPR006026 GO:0006508|GO:0008237|GO:0008270
Prci5g1626 373 CDD ZnMc_MMP 173 325 IPR033739 GO:0008237|GO:0008270
Prci5g1626 373 PRINTS Matrixin signature 215 243 IPR021190 GO:0004222|GO:0006508|GO:0008270
Prci5g1626 373 PRINTS Matrixin signature 312 325 IPR021190 GO:0004222|GO:0006508|GO:0008270
Prci5g1626 373 PRINTS Matrixin signature 118 131 IPR021190 GO:0004222|GO:0006508|GO:0008270
Prci5g1626 373 PRINTS Matrixin signature 278 303 IPR021190 GO:0004222|GO:0006508|GO:0008270
Prci5g1626 373 PRINTS Matrixin signature 191 206 IPR021190 GO:0004222|GO:0006508|GO:0008270
Prci5g1626 373 Pfam Putative peptidoglycan binding domain 64 117 IPR002477 -
Prci5g1626 373 MobiDBLite consensus disorder prediction 328 349 - -
Prci5g1626 373 FunFam Metalloendoproteinase 1 53 330 - -
Prci5g1626 373 Pfam Matrixin 170 325 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Prci5g1626 373 SUPERFAMILY PGBD-like 52 128 IPR036365 -
Prci5g1626 373 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 158 328 - -
Prci5g1626 373 Gene3D Collagenase (Catalytic Domain) 57 331 IPR024079 GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1626 Prci-Chr5 35043698 35045232 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1626 - - qsa:O6P43_033109 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g1626 5 35043698 35045232 Prci5g1626 5 35043698 35045232 ECH