Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0388 ATGCCCATGGCCATGGCGCCTACGAAGGACCCACCATCACCGGCCTTTCTTGCCACTGTTGCTGAGCTTACGAGAATTTACAGATCGCTTCCCCCTCGACCTTCGATTGAAGAAGTCCAAGCTGCCAATTCTGCAATTGAAACTGTCAATAGCGAGGAGAATATGAAACTCCAAGAAATCTCAATGCAGCAAGTCCCTGACGGTGTTCCTGAGCAGCTTTTCTCTGTGTTACAAGAGTTGAAGAAGACTGTGGTCTTGTTCCAGGGCCTTGAACAGAGGAGAGAAGCTCTCCATCTTCTTCAACAAGAGAAGATGTTTCAGACCCTTGGTGATCTTATCCAGAGGGCTTCTCAATTCGTTTCCGGGGATGCTCCGGAACCGGAACGGCCCAATTTAGCCGAAGCAGCGGGGAAAATCGAGACAGATGTTGGTATCGGTGATGACAGTCTAGTGAAGGGAAAGGAAGACGGAGACAAACCGGAGAAAATTAACCTCATCGTTGCAGAAAGATCCTCCGCGAAGACGTCTTTCTCTGCTGATGATGGAAACGCCCAGAAATTAAGTCTCATGAAATTGGCCACAGTTATCGAAAATTGTGCTAACAATGGAGTGGCAATCCTTGAGCTAAGAGGGAAACTTGAGGACCGGATGGAATGGTTGCCTGTTTCAATTGGGAAACTGTCTCATGTATGTGAGATGGACCTATCTGAGAACAGCATCATGGCTCTTCCTTCCACCTTTGGGGGTCTCAAGGCCCTAACAAAGCTCGATCTTCACGCCAACCAGCTTATAAACCTTCCACACTCTTTTGGAGAATTGATAAACCTCACTTATCTTGACCTTCACGCCAATAGATTGAGATCACTGCCAGCTTCTTTTGAGAAGTTGGAGAATCTCATTGATCTTGACCTGAGTTCAAATGAGTTCTCACAATTACCAGATTTGATTGGGAATTTAAGAAGCTTGAGAAGGTTAAATGTTGAGACAAATGAACTCGAGGAGCTACCTTATACAATTGGAAAATGTTCATCACTGGCAGAGCTGAGGCTAGATTTTAATCAGCTCAAAGCACTTCCTGAGGCAATTGGCAATATTGAGTGCTTAGAGATTTTAACTCTGCACTATAACAGAATTAAAAAGTTGCCTACTACAATGGGGAACTTGTGCAGACTGAAGGAACTTGATGCTAGCTTTAATGAACTGGAATTTGTGCCAGAGATCTTATGTTTTGCTGTTAGTCTGAAGAAATTAAATGTGTCGAATAACTTTGCAGACCTAAGAGCCTTGCCAAAATCAATTGGGAATCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAGAGCATTACCAGAGTCTTTCAGGTTCTTGTCCAAATTGAGAGTTTTTCGTGCTGAACAGACTCCTCTTGAATTGCCGCCCAGAGAAGTTGTCAAATTGGGTGCTCAGGAAGTTGTGCGGTACATGGCTGATTTTGTAGCCAAGAGGGATGCGAAATTTGTGGTACTGACGAAGAAGAAGAAGAGGGGATTTTGGTTCTGGTTTTGCTCAATATTCTGCCCCCAACAGAGAAGATTTTGA 1587 0.4405 MPMAMAPTKDPPSPAFLATVAELTRIYRSLPPRPSIEEVQAANSAIETVNSEENMKLQEISMQQVPDGVPEQLFSVLQELKKTVVLFQGLEQRREALHLLQQEKMFQTLGDLIQRASQFVSGDAPEPERPNLAEAAGKIETDVGIGDDSLVKGKEDGDKPEKINLIVAERSSAKTSFSADDGNAQKLSLMKLATVIENCANNGVAILELRGKLEDRMEWLPVSIGKLSHVCEMDLSENSIMALPSTFGGLKALTKLDLHANQLINLPHSFGELINLTYLDLHANRLRSLPASFEKLENLIDLDLSSNEFSQLPDLIGNLRSLRRLNVETNELEELPYTIGKCSSLAELRLDFNQLKALPEAIGNIECLEILTLHYNRIKKLPTTMGNLCRLKELDASFNELEFVPEILCFAVSLKKLNVSNNFADLRALPKSIGNLEMLEELDISDDQIRALPESFRFLSKLRVFRAEQTPLELPPREVVKLGAQEVVRYMADFVAKRDAKFVVLTKKKKRGFWFWFCSIFCPQQRRF 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0388 528 ProSiteProfiles Leucine-rich repeat profile. 298 319 IPR001611 GO:0005515
Prci5g0388 528 SMART LRR_typ_2 388 411 IPR003591 -
Prci5g0388 528 SMART LRR_typ_2 343 364 IPR003591 -
Prci5g0388 528 SMART LRR_typ_2 296 318 IPR003591 -
Prci5g0388 528 SMART LRR_typ_2 273 295 IPR003591 -
Prci5g0388 528 SMART LRR_typ_2 319 342 IPR003591 -
Prci5g0388 528 SMART LRR_typ_2 365 387 IPR003591 -
Prci5g0388 528 SMART LRR_typ_2 436 458 IPR003591 -
Prci5g0388 528 SMART LRR_typ_2 227 249 IPR003591 -
Prci5g0388 528 SMART LRR_typ_2 250 272 IPR003591 -
Prci5g0388 528 ProSiteProfiles Leucine-rich repeat profile. 275 297 IPR001611 GO:0005515
Prci5g0388 528 PANTHER - 384 474 - -
Prci5g0388 528 Gene3D Ribonuclease Inhibitor 174 492 IPR032675 -
Prci5g0388 528 Pfam Leucine rich repeat 275 332 IPR001611 GO:0005515
Prci5g0388 528 Pfam Leucine rich repeat 225 263 IPR001611 GO:0005515
Prci5g0388 528 SMART LRR_bac_2 319 338 - -
Prci5g0388 528 SMART LRR_bac_2 342 361 - -
Prci5g0388 528 SMART LRR_bac_2 411 432 - -
Prci5g0388 528 SMART LRR_bac_2 250 269 - -
Prci5g0388 528 SMART LRR_bac_2 273 292 - -
Prci5g0388 528 SMART LRR_bac_2 436 455 - -
Prci5g0388 528 SMART LRR_bac_2 296 315 - -
Prci5g0388 528 SMART LRR_bac_2 388 407 - -
Prci5g0388 528 FunFam Plant intracellular Ras-group-related LRR protein 4 186 494 - -
Prci5g0388 528 SUPERFAMILY L domain-like 215 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0388 Prci-Chr5 5246064 5248852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0388 253 486 Receptor kinase-like Gene Family AT3G28890 31.200 7.29e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0388 - - gmx:100798442 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g0388 5 5246064 5248852 Prci5g0388 5 5246064 5248852 ECH