Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2391 ATGAAGGGTGGAACTTTACAAATAAACTGGCATGAAACCAAACCAGTCCTTTCCCTTGATTTCCACTCAATCACCGCCACTCTTGCTACAGGAGGCGCCGATTTCGACATCAAGCTGTGGTCTGTAAAACCTGCAGAGGCACAAAAGAAACTACCTGTAGTGACCTATCTGAATAGCTTGTCTTATCATAGTTCTGCAGTAAATGTAATTCGTTTCTCCTCTTCAGGGGAACTCTTGGCCTCTGGTGCTGATGGAGGTGATCTTATAATATGGAAGTATCATCTGACAGATACAGATCAGACATGGAAGGTCCTTAAGATGTTAAGGTCTCATCACAAGGACATTCTGGACCTTCAATGGTCTCCTGATGGCACATTTTTAATTTCTGGGTCAGTTGATAATAGTTGCATAATATGGGATATTAACAAAGGCACCAATCTTCAGACATTGGATGCTCATGCCCATTATGTTCAAGGAGTTGCATGGGATCCTCTAGGGAAATATGTTGCTTCTCTTAGTTCTGACAGAACTTGCCGAATTTACATTAATAAACCTAAAAAATCTAAAGGAAGTGGGAAAATCAATTTTGTCTGCCAGCAAGTTATTTCCAAGGCAGTACATCCATTACTAGATAATTCTAAGTCAACAAATTATCATCTTTTTCATGATGAGACACTGCCGTCTTTTTTCAGAAGACCAGCATGGTCTCCTGATGGTTCATTTCTTCTTGTGCCTGCAGGCTCATACAAAATTACTTCTGGGTCTGAATCTGTAAATGCTGCTTACATATTTTCTAGAAAGGATCTCTCTCGGCCTGCCATACAGCTTCCTTGTGCAAACAAAGCTGTTGTTGCTGTCCGATTCTGCCCTGTTAATTTCAGCCTTCGGGGAACAAATTCAGCTGGGTTATTTAAGCTTCCCTATCGCCTCATTTTTGCGGTGGCCACTCTGAATTCATTGTACATTTATGACACTGAGAACAATCCTCCCATAGCTGTAATGGCTGGTCTCCACTATGCAGCAATAACAGACATTGCATGGTCACCAGATGCTCATTATTTGGCATTGTCCTCTCAAGATGGTTTCTGCACATTGGTGGAATTTGAAAATAACGAATTAGGAACACCTATCTCTTCATCAGGAGAAAAGAAAGTTTCTGATAAGGATCAGACTCAACTGAAGACATCTGACAATTTGGTCATTGAAGCTACCACAAGTGGCAGTACGGCTGAAGCAAAAAGCATGAAAAATGAAGCAGGAGGAAAGGCTGATGACATGATCATTGAATCAACTAGTAATATTGGTGTAGTTAATGCAGGAACCGGGAAAGCTGAAGCAGAAGAGAAGGTGACGACAGTTGCAGAAGCAAGTGGGAATGTTGGGGCAGTTGTAGCAGAAAGCAGGAAAAGGGAAGCAGAAGAGAAGGATGATTTCAGGGTAATTGAGGAAACTGGCAATGTTAGTGGTGTTGAGACAGCTGGCAGGAAAAGTGAAGCAGAAGAGAAGACCGATGACATGATCATTGAGAAAACTGGCAATGTCGGTGAGTTGTGGCAGCAAGCCAGGAAAGTGAAGCCGAAGAGAAAGCTGTCATGGTCATTGAAGCAACTAGGAATGCTGGTGCAGTTGTAG 1632 0.4228 MKGGTLQINWHETKPVLSLDFHSITATLATGGADFDIKLWSVKPAEAQKKLPVVTYLNSLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKYHLTDTDQTWKVLKMLRSHHKDILDLQWSPDGTFLISGSVDNSCIIWDINKGTNLQTLDAHAHYVQGVAWDPLGKYVASLSSDRTCRIYINKPKKSKGSGKINFVCQQVISKAVHPLLDNSKSTNYHLFHDETLPSFFRRPAWSPDGSFLLVPAGSYKITSGSESVNAAYIFSRKDLSRPAIQLPCANKAVVAVRFCPVNFSLRGTNSAGLFKLPYRLIFAVATLNSLYIYDTENNPPIAVMAGLHYAAITDIAWSPDAHYLALSSQDGFCTLVEFENNELGTPISSSGEKKVSDKDQTQLKTSDNLVIEATTSGSTAEAKSMKNEAGGKADDMIIESTSNIGVVNAGTGKAEAEEKVTTVAEASGNVGAVVAESRKREAEEKDDFRVIEETGNVSGVETAGRKSEAEEKTDDMIIEKTGNVGELWQQARKVKPKRKLSWSLKQLGMLVQL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2391 543 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Prci4g2391 543 Gene3D - 3 198 IPR015943 GO:0005515
Prci4g2391 543 SMART WD40_4 3 41 IPR001680 GO:0005515
Prci4g2391 543 SMART WD40_4 143 182 IPR001680 GO:0005515
Prci4g2391 543 SMART WD40_4 269 324 IPR001680 GO:0005515
Prci4g2391 543 SMART WD40_4 101 140 IPR001680 GO:0005515
Prci4g2391 543 SMART WD40_4 53 92 IPR001680 GO:0005515
Prci4g2391 543 SMART WD40_4 327 367 IPR001680 GO:0005515
Prci4g2391 543 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 92 - -
Prci4g2391 543 Gene3D - 199 437 IPR015943 GO:0005515
Prci4g2391 543 MobiDBLite consensus disorder prediction 376 397 - -
Prci4g2391 543 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Prci4g2391 543 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Prci4g2391 543 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Prci4g2391 543 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Prci4g2391 543 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Prci4g2391 543 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 460 IPR045145 GO:0006335
Prci4g2391 543 SUPERFAMILY WD40 repeat-like 10 365 IPR036322 GO:0005515
Prci4g2391 543 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Prci4g2391 543 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Prci4g2391 543 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Prci4g2391 543 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Prci4g2391 543 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Prci4g2391 543 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Prci4g2391 543 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Prci4g2391 543 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2391 28 181 Miscellaneous Gene Families AT5G08390 28.571 4.96e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2391 K10751 - gmx:547606 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2391 4 36680398 36688119 Prci4g2391 4 36680398 36688119 ECH