Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2372 ATGCTGAGCTCTGGTGGAGATATTGATGATGTGTTCTTCGACTCAGCAGATTATCTGTCACCTCAAGAATCTGATTCATGTTCCAACGAGTTGGATTATGAGATTTGGGTCAATCAGCCTCAGAGTGTGAAGGAAAGACGACAACGTTTTCTTGAGGGAATGGGTTTATCTGGTTTGTCTGTCATGTCTTCAAAACCCTACCTGGGACTAGAGAGAGTTAGGGACACCAATGAAGCACTCTCAAATGCAGATGAGAAAGAAACTTCTGAAGCAAACATTCTCTTTGATGAAATAAACATGTGTCCTAAAGATGAAGTAGATGTGAGCTTTCATGAACACAGAAACACAGAAGCTGACGTCCAAGAAGGACATGGGGATTTAGGCATGGATAAAAAGAAGAAGAAAAACTGGTGGAAGAGATTTTTGAACAAGAAGAAAGAAAGCGGCAGAGAAAAAATTAGATTGCAACTCAATAAAGAGGCAAATAAAACTCATAGGATAAAGGTGAGGCAGCACAAGAAGAGGTGGATGGAGTTAAGTGGGTTATATGTTGGACAAGAGATTACAGCTCACAATGGCTTTATATGGACTATGAAATTCAGTCCCAATGGAGAGCATCTTGCAACAGGAGGTGAAGATGGAGTTGTGAGAATATGGCGTGTTGTGTTACAGGATACATCTAGTGACTGTTTCAACGCAGAAGACAGTCTTGTTAGCAAAGTGAAACAAGACGTGTTCTGTTCTTGGAAAAAACAGTCGAGTCAACACTACCTTGTCCTTCCAAGCAAGGTTTTTCAAATTGAGGAATCACCGCTGCAAGAATTCTATGGTCATTCCAGTGATGTCCTGGACTTGGCATGGTCTAATTCGGAAATTCTTCTTTCATCTTCCGCGGATAAAACTGTCCGTTTGTGGCGAATCGGTTGTGATCAGTGCTTAAGTGTTTTCTGTCACAATGATTATGTGACATGCATTCAAGTCAATCCAGTTGATGAAAGTTACTTCATCACTGGGTCTATTGATGGCAAAGTCAGAATATGGGGAGTACATGAAGAGAGGGTCGTTGATTGGGCAGATATACATGATGTGATAACTGCTATAAGTTACAAGCCAGATGGGAAGGGATTTGTAGTTGGCTCCATTTCAGGCACTTGCCGCTTTTATGTTGCTTCAGATAAACATTGCAGACTTGAGGCACAGATTCATGTTGATGGAAAGAAGAGATCAAGGGGCAACAAAATTAGTGGCATTCAGTTTTCTCAGGAGGAACATCAGAGAGTTCTAATCACATCAGAAGATTCCAAATTTTGCTTGTGGGAAGGGATTGATGTTGTCCATAAATACAGAGGTCTTTCCAAGTCGGGGAGTCAGACGTTTGGTTCTTTTACATCAAATGGAAAACACATAATTTCAGTCGGAGAGGATTCTCATGTTTATATCTGGAACACAAGTGACTTCAACAAACAATCACCTAAACACAGAAAAACCAATGGATCTTGTGAGTACTTTTTCTCTGAAGGTACTGTTATAGCAGTGCCTTGGTCAGGCATGAGCACAGACCAGATAGTCCCAAGTTTAGCTCACTGTTCTTCGGAGTTGCAGAACCAAATGGTTGAAGATAGAGAATGTTTCTCTCACAGCAACTGGTTCTCCATTGATCACACATGTCGAGGTTCTGTGACGTGGCCTGAGGAGAAGCTCCCTGTACTTTGGAATTCACATTCTGCAGTAGAAGATGCTCATAGCCATCAACAGAAGATGACATGTCCAAAGGATCCTTGGGGTTTGTCAATTGTGACAGCCAGTTGTGATGGAACTATAAAGACATTTCACAACTTTGGATTGCCTGTTAGGCTTTAG 1860 0.4145 MLSSGGDIDDVFFDSADYLSPQESDSCSNELDYEIWVNQPQSVKERRQRFLEGMGLSGLSVMSSKPYLGLERVRDTNEALSNADEKETSEANILFDEINMCPKDEVDVSFHEHRNTEADVQEGHGDLGMDKKKKKNWWKRFLNKKKESGREKIRLQLNKEANKTHRIKVRQHKKRWMELSGLYVGQEITAHNGFIWTMKFSPNGEHLATGGEDGVVRIWRVVLQDTSSDCFNAEDSLVSKVKQDVFCSWKKQSSQHYLVLPSKVFQIEESPLQEFYGHSSDVLDLAWSNSEILLSSSADKTVRLWRIGCDQCLSVFCHNDYVTCIQVNPVDESYFITGSIDGKVRIWGVHEERVVDWADIHDVITAISYKPDGKGFVVGSISGTCRFYVASDKHCRLEAQIHVDGKKRSRGNKISGIQFSQEEHQRVLITSEDSKFCLWEGIDVVHKYRGLSKSGSQTFGSFTSNGKHIISVGEDSHVYIWNTSDFNKQSPKHRKTNGSCEYFFSEGTVIAVPWSGMSTDQIVPSLAHCSSELQNQMVEDRECFSHSNWFSIDHTCRGSVTWPEEKLPVLWNSHSAVEDAHSHQQKMTCPKDPWGLSIVTASCDGTIKTFHNFGLPVRL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2372 619 SMART WD40_4 350 389 IPR001680 GO:0005515
Prci4g2372 619 SMART WD40_4 392 440 IPR001680 GO:0005515
Prci4g2372 619 SMART WD40_4 573 611 IPR001680 GO:0005515
Prci4g2372 619 SMART WD40_4 268 306 IPR001680 GO:0005515
Prci4g2372 619 SMART WD40_4 309 348 IPR001680 GO:0005515
Prci4g2372 619 SMART WD40_4 181 220 IPR001680 GO:0005515
Prci4g2372 619 SMART WD40_4 441 482 IPR001680 GO:0005515
Prci4g2372 619 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Prci4g2372 619 PRINTS G protein beta WD-40 repeat signature 207 221 IPR020472 -
Prci4g2372 619 PRINTS G protein beta WD-40 repeat signature 293 307 IPR020472 -
Prci4g2372 619 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 347 - -
Prci4g2372 619 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 221 - -
Prci4g2372 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 221 IPR001680 GO:0005515
Prci4g2372 619 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 307 - -
Prci4g2372 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 357 IPR001680 GO:0005515
Prci4g2372 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 307 IPR001680 GO:0005515
Prci4g2372 619 PANTHER WD REPEAT DOMAIN 44 80 616 IPR040324 -
Prci4g2372 619 SUPERFAMILY WD40 repeat-like 183 609 IPR036322 GO:0005515
Prci4g2372 619 Gene3D - 179 521 IPR015943 GO:0005515
Prci4g2372 619 Pfam WD domain, G-beta repeat 311 347 IPR001680 GO:0005515
Prci4g2372 619 Pfam WD domain, G-beta repeat 187 219 IPR001680 GO:0005515
Prci4g2372 619 Pfam WD domain, G-beta repeat 270 305 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2372 Prci-Chr4 36532002 36536074 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2372 K20241 - gmx:100801576 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2372 4 36532002 36536074 Prci4g2372 4 36532002 36536074 ECH