Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2226 ATGGGTGCTGCGGGCTCCAAGCTCGAGAAAGCCCTTGGCGACCAATTTCCTGAAGGCGAGCGTTACTTTGGTCTTGAGAACTTTGGCAATACATGTTACTGCAACAGCGTTTTGCAGGCACTTTACTTTTGTGTTCCATTTCGTGAACAATTGCTAGAGTATTATGGGACTAATAAAACCACAGGGGATGCGGAAGAAAATCTCTTAACTTGCTTAGCAGACTTATTTTCTCAGATAACTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAGCGATTTGTGCAGAGGTTAAAAAAGCAGAATGAACTCTTTCGTAGCTATATGCACCAGGATGCGCATGAATTCTTGAACTTTTTGTTAAATGAACTTGTGGACATTTTAGAGAAAGAGGCACAGGCTGCAAAAAATGATCAAGATACTTCACCACCTTCTGATCCTGCAAATGCACCTAAGAATGGTCTAGCTAATGGTGCAAAAAAGGAGCCTTTAGTTACGTGGGTCCACAGAAATTTTCAGGGCATACTCACCAATGAGACAAGGTGCTTACGCTGTGAAACAGTGACAGCTAGGGATGAAACGTTTTTTGACTTGAGCCTTGATATTGAGCAGAACAGTTCAATCACAAGCTGTTTGAAAAACTTTAGTTCCACTGAGACTCTGAATGCTGAAGACAAATTTTTCTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAAATAAAGAAACCGCCTCACATCTTGGTCATCCATCTGAAGCGGTTCAAGTACATTGAACAGCTGGGCCGAAATAAGAAGCTGTCTTACCGGGTTGTCTTCCCTCTTGAGCTCAAGTTGGGTAACACTGTGGAGGATGCAGATATTGAATATTCCCTATTTGCAGTGGTTGTTCATGTTGGCAGTGGGCCTAATCACGGACATTATGTCAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGATGATGAAAATGTCGAGATGATTGACGAGTCTGCTGTGCAGACATTCTTTGGCTCAGCACAGGAATATTCCAGTAACACAGACCATGGGTACATCCTGTTCTATGAGAGTCTTGGCTCTGGAAATGGGAACTAG 1107 0.4291 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGTNKTTGDAEENLLTCLADLFSQITSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKNDQDTSPPSDPANAPKNGLANGAKKEPLVTWVHRNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRNKKLSYRVVFPLELKLGNTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGSGNGN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2226 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 293 311 IPR018200 GO:0004843|GO:0006511
Prci4g2226 368 SUPERFAMILY Cysteine proteinases 21 360 IPR038765 -
Prci4g2226 368 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 361 - -
Prci4g2226 368 MobiDBLite consensus disorder prediction 133 157 - -
Prci4g2226 368 Pfam Ubiquitin carboxyl-terminal hydrolase 23 359 IPR001394 GO:0004843|GO:0016579
Prci4g2226 368 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 362 IPR028889 -
Prci4g2226 368 CDD Peptidase_C19G 24 360 - -
Prci4g2226 368 Gene3D Cysteine proteinases 5 361 - -
Prci4g2226 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Prci4g2226 368 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2226 Prci-Chr4 34864826 34870296 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2226 24 333 Miscellaneous Gene Families AT2G24640 28.616 1.25e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2226 K11842 - gmx:100305765 711.449