Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2151 ATGGCTGAAACCGGTCTAGTCCGGTTTCCGGGAAGCTTAGACCCCCGAGCTGAAGAGTTCACGCCCACAAATCAACCGCTATATAGGCCGGCTCAACTGTTCTACCCTTACGCACCGACCAGCGGCGTTCAACTTCAGCCCCTACCATTCTGTAATGCTGCTCCTATTGGCGTTCCGTATCCGCAGTTCTGTCCCCCAGCGGCGTACGTTGGCCCTCTGGCGCCGCCGGCCTCGCCGTCGCCGTCCTCATCTACCTCGCCCACGCGGTCGCTGCTGCTAAGCTCCGTGCCGGCGGAGGTGGTGAGCGAGTCGATGTTAAGGAGGGAATTGGAGGTGTTCGGCGATGTGAGGGGGGTGCAGATGGAGAGGGTTCGAGAAGGAATAGTGACCGTTCATTTCTATGATCTGAGACATGCAGAGACGGCGTTAATGGCGATTCGGAGGCAGCACATGCAGCAACAGACCAGGCTTCGTAATTTCTATTCCTCCGCGTTGAAGTCGAGCAATTCGGCGTTAGAATCGGATTGTTACGCCCCGCCGCTGCCGCCACCAGCGCGTGGGCTGGTGGGTGGCCGTGCGGTCTGGGCCCAATATATCGTCCCTCCTTACAACGCCGTTCCTCAAGGCCAAAATCAAGGGACCATAGTGATTTTCAATTTGGATTCGGATGTGTCTGCAGGGACTCTACGACAAACTTTCGAGGCATTCGGTCCTGTGAGGGAACTGAGAGATACGCCGTCGAAGAAGAATCAAAGGTTTGTGGAATTCTTTGACGTCAGAGATGCGGCCAAGGCATTGAGGGAAATGAATGGCAAGCAAATTAACGGTAAAGCCGTTGTGATTGAGTTCAGTCGTCCTGGTGGCCATGGCAGGAAGTTCTTCAACCCACCTGCAATCTCCAAATACGCAAAGCCGTTTAATTCCCAACCCCCTTCTCCTCCCCCGCCACCACCATTTGCGCGCAAAAACGCACGTCGTTTTCCTCCTCCTCCTCGGGCTCATCATCTTCCTCAACCCCAATTGTCGTCGAAGGAATTAATAGCAGGGAACAAGGGGAATGATAACGCTAATCTGGAGAGTGTTATCAAGAGTGTTTCTTTGGAAACGACAATGTGTTTGGCGAATTTGAGCGGGGAAGAAGAGAAGCAGCAATCGGAAGAGCCTGCGGTGAGAAACGCCGCCGTGAAAAACTGCGGCGGCGAGACCGTGGCGGGAAGCACGAAGCAGCCGCAGCAACCCAGAAATAGGAATTGGAAGGGAAAGCAAGGAAAGAAGCAGGAAACTCGGTTTCTTATTAAAGAAGATGCGACTGTGGAATCGAGTTGCAAAGATTCCAGAACTACTGTCATGATCAAGAACATACCCAACAAGTACAGTCAGAAGCTGCTATTGAACATGCTGGACAACCACTGCATTCACTGCAACGAGCAGATTTCCGATGCCGACGACGACCAACCCATCTCCTCTTACGATTTCGTTTACCTTCCCATTGATTTCAACAACAAGTGTAACGTGGGGTATGGGTTTGTGAACATGACATCACCAGAAGCGACGCTGAGGCTCTACAAAGCATTCCATCTTCAACATTGGGAAGTCTTCAACTCCAGAAAAATATGCGAAGTCACATACGCGAGAGTTCAGGGTTTGGAAGCGTTGAAAGAGCACTTCAAGAATTCCAAGTTCCCATGCGAGGTGGAGCATTACTTGCCGGTGGTGTTTTCTCCGCCGCGGGATGGGAGGCAGCTGACAGAGCCACTTCCGATCGTGGGTCAGAAGCAACAAGGAGAAGCCATTAATGATGATGGTGGTGAGGTGGAGGGCGAGAATAGAGGAGGCGGCGGCGGCAAGCAACAGGATGACATGCAGAGCGGCGGCGGCGGCAGCGAAAACGGCGGCGGGATGGGTAGTGATGACGATGCTGACAGAAGAAGAGACGGTGAAGAAGTGGGAAGGGATTTGACGAATAGCTAA 1971 0.5302 MAETGLVRFPGSLDPRAEEFTPTNQPLYRPAQLFYPYAPTSGVQLQPLPFCNAAPIGVPYPQFCPPAAYVGPLAPPASPSPSSSTSPTRSLLLSSVPAEVVSESMLRRELEVFGDVRGVQMERVREGIVTVHFYDLRHAETALMAIRRQHMQQQTRLRNFYSSALKSSNSALESDCYAPPLPPPARGLVGGRAVWAQYIVPPYNAVPQGQNQGTIVIFNLDSDVSAGTLRQTFEAFGPVRELRDTPSKKNQRFVEFFDVRDAAKALREMNGKQINGKAVVIEFSRPGGHGRKFFNPPAISKYAKPFNSQPPSPPPPPPFARKNARRFPPPPRAHHLPQPQLSSKELIAGNKGNDNANLESVIKSVSLETTMCLANLSGEEEKQQSEEPAVRNAAVKNCGGETVAGSTKQPQQPRNRNWKGKQGKKQETRFLIKEDATVESSCKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQISDADDDQPISSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEVEHYLPVVFSPPRDGRQLTEPLPIVGQKQQGEAINDDGGEVEGENRGGGGGKQQDDMQSGGGGSENGGGMGSDDDADRRRDGEEVGRDLTNS 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2151 656 PANTHER RNA RECOGNITION MOTIF-CONTAINING 424 574 - -
Prci4g2151 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 279 IPR000504 GO:0003723
Prci4g2151 656 SUPERFAMILY RNA-binding domain, RBD 213 525 IPR035979 GO:0003676
Prci4g2151 656 CDD RRM3_EAR1_like 446 548 IPR034458 -
Prci4g2151 656 FunFam Terminal EAR1-like 1 399 553 - -
Prci4g2151 656 Gene3D - 406 648 IPR012677 -
Prci4g2151 656 MobiDBLite consensus disorder prediction 402 417 - -
Prci4g2151 656 SUPERFAMILY RNA-binding domain, RBD 64 151 IPR035979 GO:0003676
Prci4g2151 656 MobiDBLite consensus disorder prediction 635 651 - -
Prci4g2151 656 MobiDBLite consensus disorder prediction 574 656 - -
Prci4g2151 656 MobiDBLite consensus disorder prediction 400 426 - -
Prci4g2151 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 164 IPR000504 GO:0003723
Prci4g2151 656 Pfam RNA recognition motif 2 446 557 IPR007201 -
Prci4g2151 656 MobiDBLite consensus disorder prediction 292 340 - -
Prci4g2151 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 286 IPR000504 GO:0003723
Prci4g2151 656 SMART rrm1_1 214 282 IPR000504 GO:0003723
Prci4g2151 656 SMART rrm1_1 90 158 IPR000504 GO:0003723
Prci4g2151 656 Gene3D - 201 285 IPR012677 -
Prci4g2151 656 MobiDBLite consensus disorder prediction 307 336 - -
Prci4g2151 656 Gene3D - 79 174 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2151 Prci-Chr4 33899671 33903145 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2151 - - adu:107469016 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2151 4 33899671 33903145 Prci4g2151 4 33899671 33903145 ECH