Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1064 ATGAAGATCAACGTAAACTCCGTCGCTCGCAAAGTCGAGGTTGACAATCGCATACCCCTCCATTATTACTACCGAATTGCCGATAATCTCCTCAAACAGGCTAATATCTACCGGGAAGAGAACAATATAGTCGACTTGTATATCATACTTCTCAGATTTTCAAGTTTGGTTTCTGAAACTATACCATTTCATCGAGATTACCAAGCTTCATTTTCCAAAGAAAAAGCAGCATATAAGAAGAGATTGCCAGCTGTACTGAACGAGCTTGAATCTTTGAAGCCAGAATTCAAACAAAAGGTTAATGAATTGAATGAGTTACATGGGAATGCCCAATTTCCTAAAGCTGGTGATTCCGACAAGGCTTTGCATGGTTCAATGACTTCATCTTTGGAATGGCCTGCTGTCAGTAATAATTCTTACTCAAGCATGGATTCTAAACAGCCTGCTGGATTGGGTCTGCAGTCTTCATGGAAATATAATTATAATGCTGGTCATTACGTATCTTCAAATGCTGTTCCTATTGACAAGCAGCTTCAGAAACTATCTCTTAGTTTACCTCTTCCAAAAGAGGAGACACTATCCAGACACTCATTTTTTGGACCAAATGGTCTTCGGGGCCAGTGGCTTGGACCAACTGCAGGAATGAAGGTTCACTATCCAAGCAGTAATGATTTGACTATTCCTGAGAATTCAAGTCTGAATCAGGCTGGAAAATATGATCTTGTGGCAGTTAAAGAGGGTGATCCAGGAACAGGCATGTCCACAATGGATTCAGTGCTTTCCTTGGATGATGGAAGTTGGTCACGTCCTGCTGATGAGTCATGTCCTCCTCTACTGAATGAATCAGGGGACAGTCACTTCCAGTTGCTCAACATTAGGCAACCTTCACCTCCTCCTGTTCTTGCTCAGGTTCAGCCAGAGTATGCCCCGATTCCTCCTTCAAGAGTTGCAGATCCAAGACCTGGACCAGCCAAATCTTCTCCAGATTCTCCACTTGGTCCTGCTGCATATCAGCACCTACACATTCCTGTCAAAATGATGGATGATTTTTTGAGATTGGCTCTGGGAAATACACAGAAGAACCTAGAGACTTGTGGTGTTCTTGCGGGGTCCTTGAAAAACAGGGTTTTCCATATTACTACTCTTATAATCCCCAAGCAGGAATCAACTTCTGACTCGTGTCAAACATTGAATGAGGAAGAGATATTTGAAGTTCAAGACCGTTTATCACTTTTTCCTTTAGGCTGGATTCACACACACCCATCACAGACTTGTTTCATGTCATCAGTGGATCTCCATACACATTACTCATACCAGATCATGTTACCAGAGGCAATTGCAATTGTCATGGCCCCTACAGATGCGAAAAGTCCGCACGGCATATTTCATCTGTCTGATCCTGGTGGTGTGTCAGTAATTCGCAACTGTCAGCAACGTGGATTCCATCCCCATGAGGAGCCTTCTGATGGAAGTTCAATTTATGAGCATTGCTCTCATGTCTATATGAACGCTAACATGAAGTTTGATGTTGTTGACCTTCGACAGAGATGA 1551 0.4275 MKINVNSVARKVEVDNRIPLHYYYRIADNLLKQANIYREENNIVDLYIILLRFSSLVSETIPFHRDYQASFSKEKAAYKKRLPAVLNELESLKPEFKQKVNELNELHGNAQFPKAGDSDKALHGSMTSSLEWPAVSNNSYSSMDSKQPAGLGLQSSWKYNYNAGHYVSSNAVPIDKQLQKLSLSLPLPKEETLSRHSFFGPNGLRGQWLGPTAGMKVHYPSSNDLTIPENSSLNQAGKYDLVAVKEGDPGTGMSTMDSVLSLDDGSWSRPADESCPPLLNESGDSHFQLLNIRQPSPPPVLAQVQPEYAPIPPSRVADPRPGPAKSSPDSPLGPAAYQHLHIPVKMMDDFLRLALGNTQKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDAKSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSSIYEHCSHVYMNANMKFDVVDLRQR 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1064 516 FunFam AMSH-like ubiquitin thioesterase 3 1 115 - -
Prci4g1064 516 Gene3D Cytidine Deaminase, domain 2 328 516 - -
Prci4g1064 516 MobiDBLite consensus disorder prediction 248 280 - -
Prci4g1064 516 MobiDBLite consensus disorder prediction 310 328 - -
Prci4g1064 516 Gene3D - 3 122 - -
Prci4g1064 516 FunFam AMSH-like ubiquitin thioesterase 3 325 516 - -
Prci4g1064 516 SMART pad1_6 339 467 IPR000555 GO:0005515|GO:0008233|GO:0008237
Prci4g1064 516 MobiDBLite consensus disorder prediction 310 335 - -
Prci4g1064 516 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 336 443 IPR000555 GO:0005515|GO:0008233|GO:0008237
Prci4g1064 516 PANTHER AMSH-LIKE PROTEASE 3 514 - -
Prci4g1064 516 SUPERFAMILY JAB1/MPN domain 339 470 - -
Prci4g1064 516 CDD MPN_AMSH_like 337 514 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Prci4g1064 516 Coils Coil 86 106 - -
Prci4g1064 516 Pfam USP8 dimerisation domain 7 99 IPR015063 -
Prci4g1064 516 ProSiteProfiles MPN domain profile. 340 470 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1064 Prci-Chr4 8098349 8106614 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1064 K11866 - pvy:116122857 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g1064 4 8098349 8106614 Prci4g1064 4 8098349 8106614 ECH