Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0997 ATGTGTCCTTCCGGCCGCTCCCTCTCTCCTCCCTCCACCGCCTCCTCCTCCTCTGCAGCCGGATCCGCCGTACACTCGTCTTTTCGACCAGCGTTCGATGTCCTTGATTCTGACCGCGACGGCAAGATTAGCCGCGACGATCTACGGGCATTCTACGCCGGGAGGGCTGCCCCCGACGTCGACGACGACGTCATTGGGACGATGATGACGGTGGCAGACACCAACAAGGATGGTTTTGTGGAGTACGAGGAGTTCGAGAGGGTGGTTCTGGGAAGCGGCGGCGCCGGCAAGAAGAACGGATCTACGAGTTCGGCGACGTCGTTCCTAGAGGAGATGTTCAAAGTGATGGACAAGGACGGAGACGGCCAGCTTAGCCACCGGGATTTGAAGAGCTTCATGGAAATGGCAAGTCTCGCCGTTACCGACGATGACATCGATGCAATGATCATGTTGGCCGGAGGAGATCGAAACGGCGGCGTCACATTCGAAGGCTTGCATGGAATCTTAATGAACCGCTAA 519 0.5761 MCPSGRSLSPPSTASSSSAAGSAVHSSFRPAFDVLDSDRDGKISRDDLRAFYAGRAAPDVDDDVIGTMMTVADTNKDGFVEYEEFERVVLGSGGAGKKNGSTSSATSFLEEMFKVMDKDGDGQLSHRDLKSFMEMASLAVTDDDIDAMIMLAGGDRNGGVTFEGLHGILMNR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0997 172 Pfam EF-hand domain pair 29 88 IPR002048 GO:0005509
Prci4g0997 172 SUPERFAMILY EF-hand 24 170 IPR011992 -
Prci4g0997 172 CDD EFh 28 85 IPR002048 GO:0005509
Prci4g0997 172 Pfam EF hand 109 135 IPR002048 GO:0005509
Prci4g0997 172 ProSiteProfiles EF-hand calcium-binding domain profile. 60 95 IPR002048 GO:0005509
Prci4g0997 172 Gene3D - 92 171 - -
Prci4g0997 172 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Prci4g0997 172 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Prci4g0997 172 MobiDBLite consensus disorder prediction 1 24 - -
Prci4g0997 172 Gene3D - 13 90 - -
Prci4g0997 172 FunFam Calcium-binding protein CP1 20 89 - -
Prci4g0997 172 PANTHER CALCIUM BINDING PROTEIN 27 88 - -
Prci4g0997 172 CDD EFh 109 163 IPR002048 GO:0005509
Prci4g0997 172 ProSitePatterns EF-hand calcium-binding domain. 36 48 IPR018247 -
Prci4g0997 172 SMART efh_1 27 55 IPR002048 GO:0005509
Prci4g0997 172 SMART efh_1 144 172 IPR002048 GO:0005509
Prci4g0997 172 SMART efh_1 64 92 IPR002048 GO:0005509
Prci4g0997 172 SMART efh_1 108 136 IPR002048 GO:0005509
Prci4g0997 172 ProSiteProfiles EF-hand calcium-binding domain profile. 31 58 IPR002048 GO:0005509
Prci4g0997 172 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Prci4g0997 172 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0997 Prci-Chr4 7580207 7580971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0997 1 169 EF-hand Containing Proteins AT5G49480 52.353 1.83e-52 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0997 K02183 - cit:102615552 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g0997 4 7580207 7580971 Prci4g0997 4 7580207 7580971 ECH