Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0196 ATGGCTCCTCCTAAAGTCCTCATGGTCGCAGAGAAGCCTAGCATTGCTCTTTCTATTGCCTCTGTTCTCTCCCGCGGTCAGATGTCTACAAGAAAAGGAAGCACAGACGTTCATGAATTTGAGGGGACATTTCTTGGATCCCGTTCACACTTTAAAGTAACATCAGTCATTGGGCATATATTTAGTGTAGATTTTCCCGCTAAATATCAGGATTGGGCAGCTACAGATCCATCAGATCTTTTTCAAGCTCCAGTTATAAAGAATGAAACAAACCCAAAGGCACATATATGTAGACATCTGAATCAAGAAGCTCGTGGCTGTCATTATTTGGTATTGTGGTTAGACTGTGATCGTGAAGGAGAAAATATATGTTTTGAAGTTATAGAATCGACTAGCTTCAATGTAAATGACACTCGGAAGAGGATTTTTCGTGCACGCTTTTCTTCTGTTACTGAGAAGGATATCCTGAAAGCTCTGGATAAACTTGTGGAACCGAATAGAGATGAGGCACTGGCTGTGGATGCTAGGCAGGAAATTGATTTAAAAGTTGGAGTTGCCTTTACTCGATTTCAGACAAGTTATTTTCATGGAAAATATGGGAACCTAGATGCCAAAGTTATATCCTATGGGCCATGTCAAACTCCTACCTTAGGCTTCTGTGTGCAGAGGTATTTGCAAATAAATACCTTCAAGCCTGAAAAGTTTTGGACTCTGCATCCGTACATAATACACAATGGCTATGAAATTAAGCTAGAATGGAATCGGGGCAGATTATTTGACATGGATGTTGTTGTCATGTTTCAAAAGCTAGTAACTGAAGATGGACTTTTGGAAGTTACTGATGTATCTGAAGAACAGAAATGCAAGAGCCGCCCTGTTGGTCTGAATACAGTCAATCTTCTAAAGGTTGCTTCAAGTGCTTTAGGATTTGGACCTCAGATGGCCATGCAACTAGCTGAGCGCTTGTATACTCAAGGTTTCATCAGCTATCCGCGCACAGAAAGCACTGCATACCCACCTTCATTTGACTTTCAGGGTGTACTCTCTTCACAAGCAAATAATCCAATATGGGGTCATTATGTACAGGGGCTACTCACTAATGGTTATCACAAACCTCGATTAGGAACAGATGTAGGTGATCACCCTCCTATCACCCCAATGCGGTCAACTTCTGAGGATGTGGTAGGCAGTGACGCTTGGAAGTTATACCAATATGTCTGTCAACACTTCATGGGGACAGTGTCCCCAGATTGCAAGTATACAAGGAGAAAGGTAGAATTTTCAGTTGGCGGAGAGTCCTTTCATTGCACAGGGATGCATGTTACTGTCAAAGGATTTACGGCTATTATGCCTTGGTTAGCGGTAAATGATAAAAATATTCCATCCTTCACGAAAGGGCAGAAAATTGGTGTGTCAAAAATGGAGCTATATGAGGGGACCACCACACCACCTGATTATCTAAGTGAAAGTGAGCTGATTTCCCTTATGGAGAAGAATGGGATTGGAACAGATGCATCAATTCCCGTACATATCAACAACATCTGTGAACGGAATTATGTGCAGGTACAAGCAGGCAGGAAGCTTGTCCCAACTCCGTTAGGTGTGAGTTTAATAAGAGGTTATCAGTCAATTGATGCAGACCTCTGCCTACCTGATATCCGTAGCTTCATTGAGCAGCAAATTACTCTAATTGCTAGGGGTCAGATAGATCATTCTCGTGTTGTGCAGCATGTACTGCAACAATTCAAGCAGAAGTTTAGTTACTTTGTTAAGAAGATTGAAAACATGGATGCATTATTTGAAGCACAATTCTCTGCACTTACTGATTCAGGGCGTACTCTTAGTAAATGTGGTAAATGCTTGCGATATATGAAGTACATTTCTTCTCAGCCACCACGATTGTATTGTAATACATGTGAGGAGGTTTATCATCTTCCACAGAAGGGAACAATTAAGGTAATGTATTGTTCTGGCCGAAAAAGACAGCATATTACCTATCAAATTACATGGACTCAAATCTATCTTCAACTGTACAAGGAGCTGGCTTGTCCTTTGGACAATTTCGAGCTTTTGATCTGCTCCATGCCTGGCCCAGAGGGCAAATCATTCCCACTCTGCCCGTACTGCTACAGCAATCCTCCATTTGAGGGCATTGAAACACTCGTCAATATGGCTAAAATCGGTGCTTCTGGCAAGCTAGGGAAGGGAGCTGGCATGCCATGCATCCTCTGCCCCCATCCCACCTGCCCAAACTCTCTGGTTTCACAACGGGTCTGTGCTTGCCCCGAGTGTAGTGGGACACTTGTCTTGGACCCAGTAAGCGCTCCCAATTGGCGACTCTATTGCAATATGTGCAATTGCCTTGTTCTTCTTCCTCAAGGTGCTCACAGAATCTCCACAACTCGGGAACAATGCCCTGAATGTGACTCCACAATCATAGAAGTGGACTTCAACAAGAAAACAACTCCTCTGGAAGACGGAGCTACGTTGCACCGTGGTTGTGTTCTTTGTGATGAGTTGCTTCATTCCCTTGTGGAGATGAAACATGGGAGGAGTTTCAGTTCGAGAGGGAGAGGGAGAGGTAGGGGGAGGGGAAGGGGAAGGGGAAGGGGAGGTCGTGGCAGAGGAAAAATGATTGACCCAAAAATGAGCTTCCGAGACTTCTAA 2667 0.4357 MAPPKVLMVAEKPSIALSIASVLSRGQMSTRKGSTDVHEFEGTFLGSRSHFKVTSVIGHIFSVDFPAKYQDWAATDPSDLFQAPVIKNETNPKAHICRHLNQEARGCHYLVLWLDCDREGENICFEVIESTSFNVNDTRKRIFRARFSSVTEKDILKALDKLVEPNRDEALAVDARQEIDLKVGVAFTRFQTSYFHGKYGNLDAKVISYGPCQTPTLGFCVQRYLQINTFKPEKFWTLHPYIIHNGYEIKLEWNRGRLFDMDVVVMFQKLVTEDGLLEVTDVSEEQKCKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFQGVLSSQANNPIWGHYVQGLLTNGYHKPRLGTDVGDHPPITPMRSTSEDVVGSDAWKLYQYVCQHFMGTVSPDCKYTRRKVEFSVGGESFHCTGMHVTVKGFTAIMPWLAVNDKNIPSFTKGQKIGVSKMELYEGTTTPPDYLSESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTPLGVSLIRGYQSIDADLCLPDIRSFIEQQITLIARGQIDHSRVVQHVLQQFKQKFSYFVKKIENMDALFEAQFSALTDSGRTLSKCGKCLRYMKYISSQPPRLYCNTCEEVYHLPQKGTIKVMYCSGRKRQHITYQITWTQIYLQLYKELACPLDNFELLICSMPGPEGKSFPLCPYCYSNPPFEGIETLVNMAKIGASGKLGKGAGMPCILCPHPTCPNSLVSQRVCACPECSGTLVLDPVSAPNWRLYCNMCNCLVLLPQGAHRISTTREQCPECDSTIIEVDFNKKTTPLEDGATLHRGCVLCDELLHSLVEMKHGRSFSSRGRGRGRGRGRGRGRGGRGRGKMIDPKMSFRDF 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0196 888 SMART topIban2 141 237 IPR003601 GO:0003677|GO:0003916|GO:0006265
Prci4g0196 888 Gene3D - 2 165 - -
Prci4g0196 888 ProSiteProfiles Toprim domain profile. 5 148 IPR006171 -
Prci4g0196 888 Gene3D Topoisomerase I, domain 4 291 416 IPR013826 -
Prci4g0196 888 SMART toprim5 5 136 IPR006171 -
Prci4g0196 888 CDD TOP1Ac 168 586 IPR013497 GO:0003677|GO:0003916|GO:0006265
Prci4g0196 888 Pfam Toprim domain 6 149 IPR006171 -
Prci4g0196 888 MobiDBLite consensus disorder prediction 851 888 - -
Prci4g0196 888 CDD TOPRIM_TopoIA_TopoIII 5 162 IPR034144 -
Prci4g0196 888 SMART topIaneu2 283 538 IPR003602 GO:0003677|GO:0003916|GO:0006265
Prci4g0196 888 Gene3D Topoisomerase I, domain 3 231 484 IPR013825 -
Prci4g0196 888 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 626 IPR023405 -
Prci4g0196 888 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 320 334 IPR023406 GO:0003917
Prci4g0196 888 PANTHER PROKARYOTIC DNA TOPOISOMERASE 5 849 IPR000380 GO:0003677|GO:0003917|GO:0006265
Prci4g0196 888 FunFam DNA topoisomerase 3 165 - -
Prci4g0196 888 FunFam DNA topoisomerase 291 416 - -
Prci4g0196 888 PRINTS Prokaryotic DNA topoisomerase I signature 402 418 IPR013497 GO:0003677|GO:0003916|GO:0006265
Prci4g0196 888 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Prci4g0196 888 PRINTS Prokaryotic DNA topoisomerase I signature 207 225 IPR013497 GO:0003677|GO:0003916|GO:0006265
Prci4g0196 888 PRINTS Prokaryotic DNA topoisomerase I signature 325 334 IPR013497 GO:0003677|GO:0003916|GO:0006265
Prci4g0196 888 PRINTS Prokaryotic DNA topoisomerase I signature 500 514 IPR013497 GO:0003677|GO:0003916|GO:0006265
Prci4g0196 888 MobiDBLite consensus disorder prediction 854 872 - -
Prci4g0196 888 MobiDBLite consensus disorder prediction 873 888 - -
Prci4g0196 888 Gene3D Topoisomerase I, domain 2 172 586 IPR013824 -
Prci4g0196 888 Pfam DNA topoisomerase 165 576 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0196 Prci-Chr4 1320342 1332898 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0196 K03165 - gmx:100791807 1516.52