Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0189 ATGGAGACTCTGGTGATGGTGAGTCCAAGTCCCATTCAGCATCTCCGCTTCGAGTGCAGCAGAATTGCGAAACCTTGCGAGCCCCTCTTCCTTAAACATTTCCCCAAATTCCTTTATCTCAAGACTCAAATCCGTCCGACGCCTGTTCATTTCTCGCCAACTGATACGTTTTCAGATAGTGCTTCTCTACAGCACAAAACCCTTCTCGTTGAGATTTACCATGAGCATCGCACCCTCAAATCCTTACTGCAAAAGCTTCAGAAGAAACATTCAAGCCCTCTCTGGATACTCGAACAAGACGGAGATTGGTCCAAAGCCCAGTTTTGGGCCGTCGTCAGGTTTCTTAAACTTGCCTCCAGATCCAAAGAAATCCTTCAGGTATTTGATATGTGGAAGAAAATTGAGGGTTCACGGATTAATGAATTCAACTATAACAAGATAATATGTGTGTTGACTGAAGAAGGACTGCTGAAAGAGGCAGTGGCTGCACTGCAGGAGATGAAAAATCATGGACTCAAGCCTTCTTCAGGTGCGTATAATCCAATCATTCATGGCTTCTCCATGGCAGGCAAATTCAATGATGCTTTGTTTTTTCTTAGTGAGATGAAAGAATTCAGTGTAGTGCCGGACACTGAAACCTATGATAGTTTAATTCAAGGCTATGGGAAGTTTAAGATGTATGATGAGATGGGCAAGTGTGTGAAAAAGATGGAGTTGGATGGATGTTCTCTTGTTCACACAACTTATAACATACTTGTAAGAGAATATTCAAAAGGTGGACTGCTTCAGAGAATGGAATCAGTATATCAAAGAATGCTTTCCAAAAAAATGCGTCTGCATTCTTCTACTTTGGTTGCAATGCTTGAGGCTTATGCCAGATTTGGGATAGTTGTAAAGATGGAAAAAGTTTATAGAAAACTTTTGAACTCAGGAACCCCTTTAAAGGATGACTTAATAAGAAAACTTGCAGAAGTTTATATTGAGGACTATATGTATTCCAGATTAGAAGATTTGGGGCTTGATTTACGTTCGACTTTGGGTGGGACTGAACTTGTTTGGTGTCTGCGCCTCCTTTCATATGCTTGTCTTTTGAGTCGAAAAGGCATGGATATCATTGTTGGAGAAATGCAAGAAGCCAAAGTTCAATTGAATGTTACACTTGCAAATATCATTATGCTGGCTTATGTGAAGATGAATGATTTCAAGCACTTGAGAATTTTTCTCTCTCAATCGGCAACCCATGGGGTGAAGCCTGACATAGTCACTATTGGAATTATCTTTGATGCAACTAGAATGGGTTTTGATGGCAGTGCAACTTTAGAAAGATGGAGAAGGATGGGCTATCTTCATAGAGTTGTAGAAATGGAAACAGATTCTTTGGTCCTTAATGCGTTTGGGAAAGGTAATTTTCTTAAAACCTGCGAAGAAGTGTACTCTTCTCTGCACCCTGAGGATAGAGAAAGAAAAAGATGGACTTATGGTGGCCTCATTGATTTAGTATCTGAACATGTTGAAGGTAGTATCCACTATAGGAGAAACAAATAA 1545 0.4026 METLVMVSPSPIQHLRFECSRIAKPCEPLFLKHFPKFLYLKTQIRPTPVHFSPTDTFSDSASLQHKTLLVEIYHEHRTLKSLLQKLQKKHSSPLWILEQDGDWSKAQFWAVVRFLKLASRSKEILQVFDMWKKIEGSRINEFNYNKIICVLTEEGLLKEAVAALQEMKNHGLKPSSGAYNPIIHGFSMAGKFNDALFFLSEMKEFSVVPDTETYDSLIQGYGKFKMYDEMGKCVKKMELDGCSLVHTTYNILVREYSKGGLLQRMESVYQRMLSKKMRLHSSTLVAMLEAYARFGIVVKMEKVYRKLLNSGTPLKDDLIRKLAEVYIEDYMYSRLEDLGLDLRSTLGGTELVWCLRLLSYACLLSRKGMDIIVGEMQEAKVQLNVTLANIIMLAYVKMNDFKHLRIFLSQSATHGVKPDIVTIGIIFDATRMGFDGSATLERWRRMGYLHRVVEMETDSLVLNAFGKGNFLKTCEEVYSSLHPEDRERKRWTYGGLIDLVSEHVEGSIHYRRNK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0189 514 PANTHER OS08G0520200 PROTEIN 58 505 - -
Prci4g0189 514 NCBIfam pentatricopeptide repeat 144 175 IPR002885 -
Prci4g0189 514 NCBIfam pentatricopeptide repeat 248 277 IPR002885 -
Prci4g0189 514 NCBIfam pentatricopeptide repeat 179 211 IPR002885 -
Prci4g0189 514 NCBIfam pentatricopeptide repeat 213 243 IPR002885 -
Prci4g0189 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Prci4g0189 514 Pfam PPR repeat 144 172 IPR002885 -
Prci4g0189 514 Pfam PPR repeat 248 275 IPR002885 -
Prci4g0189 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Prci4g0189 514 Gene3D Tetratricopeptide repeat domain 352 513 IPR011990 GO:0005515
Prci4g0189 514 Gene3D Tetratricopeptide repeat domain 232 338 IPR011990 GO:0005515
Prci4g0189 514 Gene3D Tetratricopeptide repeat domain 74 231 IPR011990 GO:0005515
Prci4g0189 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Prci4g0189 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Prci4g0189 514 Pfam PPR repeat family 178 222 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0189 144 311 Miscellaneous Gene Families AT4G11690 25.000 3.08e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0189 - - qsa:O6P43_023602 638.647