Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0167 ATGAGTGTGCAACATAAAAGTTCTGAGAAGGACTTAAAGATCAAAGGAATTGAAGAGGGAATCACACTAGGAGATATGAATGTGAAAATCGAGGCAATGAAGAACATGCAAGGCCCATTTCTGTTTGCAATACTCTTCATGTGCTTTTCTGTTTCAAGTTGCCTGCGTGCTAGAATGAGACCTCCTGTTAATCTTACTTTCAATGTACTTGATTACGGTGCTATTGGGAATGGCCAAACTGATGATTCGCAAGCTTTTCTCAAAGCATGGAAGGATGTTTGTGAAGCAACGCAGGGCAGTCTAACTCTCTTAATACCCAACAACAAAACCTTCATGCTGCAACCTGTGATTTTCATGGGTGAGTGCAAGTCTTCAGCTATTAACGTCAAGATTGAAGGAAGCTTGATTGCACCAAGAGAAGTGAGTGATTGGAAATGGGAAAGAGGGGATGAGGGTAGATGGATACATTTCAGTGACATAAAGGGGCTTCTTGTGGATGGAAGAGGACTTGTTGATGGCCAGGGTGCCCCCTGGTGGGACTGTTTTCATGAATCCAGATGCAAGAGGCCTGACGTAAGTTTGCTGAGTTTTCACAGGTGTGAAAATCTACAACTGAAGGTGCTTACTCACATAAATGGTCCAAAAGTTCATATTCACTTAGATGACTGCAACGGGATACACCACTCCAATTTGCATGTTGTTCCGCCTCAGGATAGCCCAAACACTGATGGGATTGATATCTCCACAACATCCAACATGATCATTCAGGATTCCAACATCGAAACCGGTGATGACTGCATTGCCATTAATGAGGGCTTATCTTTCATTAACGTTACTGGTGTTTATTGCGGACCTGGTCATGGCATCAGCATTGGGAGCCTCGGATCAAAGAGGTCTCATGCAACAGTGGAAGACATCCACGTCCGAAATTGTACCTTCACAAGAACTTCAAATGGAGCCAGAATCAAGACATGGAAGAGAGGCTCTGGATATGCCAGAAGGATCACATTTCGGAGGTATGTGGGACTACATGAAGTAACAGCAGTGGAAGTTAGTGACATTACATTTAGGAATTTTGGCGGAACTTCAGCTTCTGAGGATGCAATTAAATTGGAGTGCGACGACAGCAGAGGTTGCACGGACATAGTGTTGGAAAAAATTAATATAACTTCTTCTGATCTTGGAAAAACCACCCATGCATCCTGCGAAAATGCTCGTGGTACAAGTTCTTCATCCAATGTTCCTGATATAGATTGCCTTCAATGGTGA 1269 0.4326 MSVQHKSSEKDLKIKGIEEGITLGDMNVKIEAMKNMQGPFLFAILFMCFSVSSCLRARMRPPVNLTFNVLDYGAIGNGQTDDSQAFLKAWKDVCEATQGSLTLLIPNNKTFMLQPVIFMGECKSSAINVKIEGSLIAPREVSDWKWERGDEGRWIHFSDIKGLLVDGRGLVDGQGAPWWDCFHESRCKRPDVSLLSFHRCENLQLKVLTHINGPKVHIHLDDCNGIHHSNLHVVPPQDSPNTDGIDISTTSNMIIQDSNIETGDDCIAINEGLSFINVTGVYCGPGHGISIGSLGSKRSHATVEDIHVRNCTFTRTSNGARIKTWKRGSGYARRITFRRYVGLHEVTAVEVSDITFRNFGGTSASEDAIKLECDDSRGCTDIVLEKINITSSDLGKTTHASCENARGTSSSSNVPDIDCLQW 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0167 422 PANTHER - 65 408 - -
Prci4g0167 422 Pfam Glycosyl hydrolases family 28 101 407 IPR000743 GO:0004650|GO:0005975
Prci4g0167 422 ProSitePatterns Polygalacturonase active site. 280 293 IPR000743 GO:0004650|GO:0005975
Prci4g0167 422 SMART pbh1 346 373 IPR006626 -
Prci4g0167 422 SMART pbh1 215 249 IPR006626 -
Prci4g0167 422 SMART pbh1 250 271 IPR006626 -
Prci4g0167 422 SMART pbh1 303 324 IPR006626 -
Prci4g0167 422 SUPERFAMILY Pectin lyase-like 60 420 IPR011050 -
Prci4g0167 422 Gene3D - 57 418 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0167 Prci-Chr4 1098145 1100973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g0167 41 421 Glycoside Hydrolase AT5G17200 40.189 8.39e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0167 K01184 - qsa:O6P43_002599 401.364