Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g0080 ATGAGTCTGCCATTTTCTCCAGCGGCAAACGCTTCCATCATTGGAAGCCATATCAGTGCAGGCAAATCAATCAGCAGAAGACTTAGTGTTACAGGAGCACAAGTGACCTTGGCTCCCAAACCAACAAGGGATATCGTTTATCGCCATCTGTCCAAACAAGGAATTCCTCTTGCTGATCTGCACGTACAAGATGTTGTAGAGAGGCAGACTCAACCGGCCAAGTTCATCTCAACCAGTCCTCGTAACAAGCCAATGTTTCGTCCTGGTTTTTTAGAGGAAGCGTATGAAAGTTGCAGAAAGATCTGTGCAGAATATGCCAAGACCTTCTATCTAGGAACTCTACTAATGACAGAAGAAAGACAGAAAGCTATATGGGCGATTTATGTTTGGTGCAGGAGGACGGATGAATTGGTTGACGGTCCAAATGCGATCTATATGAGCTCAGCTGTTCTTGATAGGTGGGAAGAGAGACTCCATGACATTTTCAACGGACGCCCTTATGACATGCTCGATGCTGCTCTGACTGAGACTGTGTCTATGTTTCCCTTGGACATCAAGCCTTTCAGGGACATGATAGAAGGCATGAGGATGGATACAAGGAAAACCCGGTATAAGAATTTTGAAGAGCTATATCTTTACTGCTACTATGTGGCCGGAACTGTTGGCTTGATGAGTGTTCCAGTGATGGGAATTGCAGCAGAGTCTCTTCTCCCTGCTCAAACTATATACAATGCAGCACTGTATTTGGGTATTGGGAATCAACTGACAAACATTCTCAGAGATGTTGGAGAGGATGCATCAAGAGGTAGAGTTTACCTTCCCCAAGATGAACTTGCCCAGTTTGGCTTAAGTGACAAGGATATTTTCTCAAGAACTGTCACTGAAGAATGGAAGGTGTTCATGAAACGTCAGATAAGTAGGGCAAGATTCTACTTCAGCTTGGCAGAGGAAGGGGCTTCTCAGCTCGAGAAGGCAAGCCGTTGGCCGGTTTGGTCGTCGTTAATAATATACGGTAAGATCTTGGATGCAATAGAAGACAACGAATATGACAACTTGACAAGAAGAGCCTACGTAGGAAAAGCAAAGAAACTTATGATGTTGCCTCTAGCATTCACCAGATCTCTCTCATTCTCTCTCAAGGATCAACACACGCGCTCTTCCTTCCACAACAACCTTCAATAA 1182 0.4459 MSLPFSPAANASIIGSHISAGKSISRRLSVTGAQVTLAPKPTRDIVYRHLSKQGIPLADLHVQDVVERQTQPAKFISTSPRNKPMFRPGFLEEAYESCRKICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAIYMSSAVLDRWEERLHDIFNGRPYDMLDAALTETVSMFPLDIKPFRDMIEGMRMDTRKTRYKNFEELYLYCYYVAGTVGLMSVPVMGIAAESLLPAQTIYNAALYLGIGNQLTNILRDVGEDASRGRVYLPQDELAQFGLSDKDIFSRTVTEEWKVFMKRQISRARFYFSLAEEGASQLEKASRWPVWSSLIIYGKILDAIEDNEYDNLTRRAYVGKAKKLMMLPLAFTRSLSFSLKDQHTRSSFHNNLQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g0080 393 SFLD Isoprenoid Synthase Type I 92 374 - -
Prci4g0080 393 FunFam Phytoene synthase chloroplastic 87 369 - -
Prci4g0080 393 Pfam Squalene/phytoene synthase 105 360 IPR002060 GO:0009058
Prci4g0080 393 SFLD Phytoene synthase like 92 374 IPR044843 GO:0004311
Prci4g0080 393 SUPERFAMILY Terpenoid synthases 94 382 IPR008949 -
Prci4g0080 393 ProSitePatterns Squalene and phytoene synthases signature 2. 249 274 IPR019845 GO:0016765
Prci4g0080 393 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 44 375 - -
Prci4g0080 393 ProSitePatterns Squalene and phytoene synthases signature 1. 213 228 IPR019845 GO:0016765
Prci4g0080 393 CDD Trans_IPPS_HH 96 363 IPR033904 GO:0004311
Prci4g0080 393 Gene3D Farnesyl Diphosphate Synthase 89 369 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g0080 Prci-Chr4 623115 625849 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g0080 K02291 - cave:132164622 560.066