Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3128 ATGGTCGGTATCATGTCGTTGATAACAGGGTGGCCAGGCCCGAGTGGGTTTGGTTCTGCTTCAACTGCAGAGAAGGTCACCGAAGGAATCGATGCCTCCAATCTCACTGCCATTATTACAGGAGGAGCGAGTGGAATTGGCTTTGAGACAGCAAGAGTTTTAGCTCTTCGAAAGGTGCACGTGATCATTGCTGCAAGAAATATGGAAGCTTGCAAGAAAGCTAAGAATCTTATTCTGCAGCAAAACCCGTCCGCTCGTATCGATATACTGAAGCTCGACCTTTCCTCGGTCAAGTCTATCAGAGCATTTGTTGACAACTTCATCGCTCTTGATCTTCCACTCAACATATTAATAAACAATGCTGGAGTTATGTTCTGCCCTTTCCAACTCTCACAGGACGGGATTGAGATGCAGTTCGCAACAAATCATATCGGTCATTTCCTGTTGACCAATCTTCTTCTTGACAAAATGAAACAAACTGCAAAAGCCAGTGGAATCGAGGGAAGGATCGTGAATCTGTCTTCAATTGCCCATAACTATAGTTACCCAAAGGGAATTCGATTTGAGAAGATCAATAATCGAAACGGTTACTGTGACAAGAAAGCATATGGGCAGTCCAAGTTGGCTAACATCCTTCATGCAAATGAGCTAGCTCGCCGCCTGCAGGAAGAGGGGGCGAACATTACAGCCAACTCAGTCCACCCAGGAGTGATAATGACTCCTCTCATGAGACACTCCTCCTTCCTTATGCATCTTCTGAAAGTGTTCACCTTTTACATATGGAAGAATGTCCCACAGGGGACAGCCACAACATGCTATGTTGCTCTGCACCCAAGCATGAAAGGCGTGAGTGGGAAATACTTTCAGGATTGCAATGAGCACAGGCCAAATTCTTATGCCAGAAACCAAGTGCTAGCCGCCAAACTCTGGGATTTCAGCAACACGGTCATCAATTCACTTTCCAAGGCTTAG 972 0.4578 MVGIMSLITGWPGPSGFGSASTAEKVTEGIDASNLTAIITGGASGIGFETARVLALRKVHVIIAARNMEACKKAKNLILQQNPSARIDILKLDLSSVKSIRAFVDNFIALDLPLNILINNAGVMFCPFQLSQDGIEMQFATNHIGHFLLTNLLLDKMKQTAKASGIEGRIVNLSSIAHNYSYPKGIRFEKINNRNGYCDKKAYGQSKLANILHANELARRLQEEGANITANSVHPGVIMTPLMRHSSFLMHLLKVFTFYIWKNVPQGTATTCYVALHPSMKGVSGKYFQDCNEHRPNSYARNQVLAAKLWDFSNTVINSLSKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3128 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Prci3g3128 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Prci3g3128 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Prci3g3128 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Prci3g3128 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Prci3g3128 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Prci3g3128 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Prci3g3128 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Prci3g3128 323 PANTHER RETINOL DEHYDROGENASE 14 316 - -
Prci3g3128 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Prci3g3128 323 Gene3D - 26 320 - -
Prci3g3128 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Prci3g3128 323 Pfam short chain dehydrogenase 36 184 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3128 Prci-Chr3 42482027 42484042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3128 17 296 Acyl Lipid Metabolism Gene Families AT3G46170 24.232 9.29e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3128 - K11153 gmx:100801849 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2638 1 45872999 45877537 Prci3g3128 3 42482027 42484042 CCT
Prci3g3128 3 42482027 42484042 Prci3g3128 3 42482027 42484042 ECH