Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3878 ATGGATCCCCATCCTCCCCGCCGCCGTCACCACAACCCGCCATTTCCAGCCACTTCTCACGAAGGCGCCACTGCTTCTTCGAGGGATCTCCTCAAGAAGTCTTCCTCCACCGTCGCCAACGGCGGCCGTCGAGCCCCGTCTCCGACCCCTAAAGCTTCCGATGCTTTGCCTCTGCCGCTGTACCTTACCAATGCTGTTTTCTTCACGCTCTTCTTCTCCGTTGCGTACTATCTCCTTCACCGCTGGCGTGACAAGATCCGGAACTCTACCCCTCTTCACGTCGTTACCTTGTCAGAGATTGCCGCCATTGTGTCCCTCATCGCGTCTTTTATTTACCTTCTTGGCTTTTTTGGCATTGACTTCGTACAGTCCTTCATCGCGCGTGCTTCTCACGATGTTTGGGACCTCGATGATGATGCCGGCGAGGCCGATGCTGCCGAGTCTCGTCCTCACAACCACCATCCCCGCCGTGATTTCGTAATTGAGCAACCGGTTCCTAGATTAGTGGTGGATTCCGATCCCTTGGTTTCGTCTCTGCCCTCCGAGGAAGATGAGAAGATCGTACAAGCCGTGCTGGACGGTACGATTCCATCGTACTCACTCGAGTCCAAGCTCGGTGACTGTAGGCGCGCGGCGGCCATCCGACGCGAGGCCTTGCAGAGAATGAATGGAAAATCTCTTCAGGGATTACCGTTGGATGGGTTCGATTACGATTCAATTCTGGGGCAGTGCTGTGAAATGCCGGTGGGTTACGTACAAATTCCGGTGGGAGTAGCTGGGCCTTTGTTGCTTGATGGCTTTGAGTATACTGTACCAATGGCAACCACTGAGGGGTGCTTGGTGGCGAGCACGAACAGAGGTTGTAAAGCCATTTATGCTTGTGGCGGGGCTACCAGCATAGTGCTGAGGGATGGAATGACCAGAGCGCCTGTTGTAAGGTTCGCCACAGCCAAAAGGGCGTCGGAGTTGAAGTTCTTTCTTGAAGATCCTCTCAATTTTGATACCCTGGCCGCCGTTTTTAATAGGTCAAGTAGATTTGCTAGGCTTCAAAGTATTCATTGTTCTATTGCTGGAAAGAACCTGTACATGAGATTCAGCTGTTGCACAGGTGATGCCATGGGGATGAACATGGTTTCCAAAGGAGTGCAGAATGTTCTTGATTTCCTTCAAAATGATTTCCCGGACATGGATGTTATAGGCATCTCTGGGAATTATTGTTCGGACAAGAAACCTGCTGCTGTAAATTGGATTGAGGGGCGCGGAAAGTCAGTTGTTTGTGAAGCAATTATTAAAGAAGAGGTGGTTAAGAAGGTCTTGAAGACCAACGTGGCTGCCTTAGTGGAACTTAACATGCTTAAAAACCTTGCTGGTTCTGCTGTTGCTGGTGCTCTTGGTGGATATAATGCTCATGCCAGCAATATTGTTTCTGCTATTTTTATAGCCACTGGTCAAGATCCAGCTCAAAATATTGAGAGCTCTCATTGCATAACCATGATGGAAGCCGTCAATGATGGGAGAGACCTTCATATCTCAGTGTCCATGCCTTCCATTGAGGTCGGTACAGTTGGAGGTGGTACTCAGCTAGCATCTCAGTCTGCTTGCTTGAATTTGCTGGGCGTGAAGGGTGCGAGCAAGGAGTCACCGGGATCGAACTCTAGACTCTTGGCCACCATTGTCGCTGGTTCAGTTTTGGCAGGAGAGCTTTCTCTGATGTCTGCCATTGCCGCAGGCCAGCTTGTAAGGAGTCACATGAAATACAATAGATCAAGCAAGGATGTCTGTAAAATGGCAAGTTGA 1797 0.5031 MDPHPPRRRHHNPPFPATSHEGATASSRDLLKKSSSTVANGGRRAPSPTPKASDALPLPLYLTNAVFFTLFFSVAYYLLHRWRDKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFIARASHDVWDLDDDAGEADAAESRPHNHHPRRDFVIEQPVPRLVVDSDPLVSSLPSEEDEKIVQAVLDGTIPSYSLESKLGDCRRAAAIRREALQRMNGKSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYACGGATSIVLRDGMTRAPVVRFATAKRASELKFFLEDPLNFDTLAAVFNRSSRFARLQSIHCSIAGKNLYMRFSCCTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVAALVELNMLKNLAGSAVAGALGGYNAHASNIVSAIFIATGQDPAQNIESSHCITMMEAVNDGRDLHISVSMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVRSHMKYNRSSKDVCKMAS 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3878 598 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 364 378 IPR023076 GO:0004420
Prci2g3878 598 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 305 421 IPR009023 -
Prci2g3878 598 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 184 588 IPR002202 GO:0004420|GO:0015936
Prci2g3878 598 CDD HMG-CoA_reductase_classI 185 588 IPR004554 GO:0004420|GO:0005515|GO:0008299
Prci2g3878 598 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 410 583 - -
Prci2g3878 598 Pfam Hydroxymethylglutaryl-coenzyme A reductase 212 588 IPR002202 GO:0004420|GO:0015936
Prci2g3878 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 362 380 IPR002202 GO:0004420|GO:0015936
Prci2g3878 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 507 528 IPR002202 GO:0004420|GO:0015936
Prci2g3878 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 402 427 IPR002202 GO:0004420|GO:0015936
Prci2g3878 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 453 479 IPR002202 GO:0004420|GO:0015936
Prci2g3878 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 244 265 IPR002202 GO:0004420|GO:0015936
Prci2g3878 598 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 271 291 IPR002202 GO:0004420|GO:0015936
Prci2g3878 598 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 573 586 IPR023076 GO:0004420
Prci2g3878 598 MobiDBLite consensus disorder prediction 19 43 - -
Prci2g3878 598 Gene3D - 175 254 IPR023282 GO:0004420
Prci2g3878 598 MobiDBLite consensus disorder prediction 1 51 - -
Prci2g3878 598 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 519 526 IPR023076 GO:0004420
Prci2g3878 598 Gene3D - 255 583 IPR023074 GO:0004420
Prci2g3878 598 Gene3D - 305 421 IPR009023 -
Prci2g3878 598 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 180 254 - -
Prci2g3878 598 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 184 588 IPR004554 GO:0004420|GO:0005515|GO:0008299
Prci2g3878 598 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 305 421 - -
Prci2g3878 598 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 181 577 IPR009029 GO:0015936|GO:0016616
Prci2g3878 598 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 35 592 IPR002202 GO:0004420|GO:0015936
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3878 5 593 Lipid Metabolism Gene Families AT1G76490 74.007 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3878 K00021 - jre:109007712 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g3878 2 47843949 47847549 Prci2g3878 2 47843949 47847549 ECH