Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3074 ATGGATCCAATCGAAGCATCGCAAGAGCTTGCTTTTCGGGTCGGGTTTACCGGTCACAGTGGGCACCTCCGAGTGGAGCCGCTGTCGACGGTGGAGCGTTCCAACCCGTTGAGTTCGCTTCCTGATTTCATCCTGCCGCCCGCATTTCCGGAGGAGACACCTGAATCTATAAAGAAGTATATTGAACAGACATATCTCAGCCCAAGATTGGACCCTGATGAATTTTCACCCGAGAGAGTTGGGAGGCAGTGGGAATTTGACTGGTTTGACAGGGCTGAAGTGCCTCTGGAGCCATCTTTGCCACGGTCTGTCGTGGTTCCTGTTTGGGAACCACCATTTCGACGCCAAAACAATGTTTCAGAGCAAGGAAAATGGGAGCCAAAATCTGAGGAGGTGGATGTGTCAGAATTGATGCTAGGAGATGAAGACTCTGGGCCATTACCCCGTGCCTCTGGATCTGCTAAGGATTTTGTAAGGGGAAGCATCAATAATCGCCCTTTTCGCCCTGGAGGTTTCGATAACTCGCAAACTTTAGACAGAATTATTCCAGAAGGTACTTCTACTGGTGAGTGGGTGCGTGAAATTTTGAATGGCGGCCCTCCTCAGATGATCCCTCCAGGCTTTAAACAAGGGTTGGACCTTGGAGCATTTAAGCCCTATCCTTGCTCGTGGAATGTTTACAAGGATGTCAGTTTGCTTAAGAGCTCATCAGATGAAAAACTGAGTGAGTTGTCCCTACAGTTTGATGACTTATTTAAGAAGGCCTGGGAGGATGGTGTTACTCAAGAACAGGAGGAAGATGGTATCTTTACTAGCCCCGGCTGCTTATCAGAAGTGGAGCCTGTTATAGTGGAAGCTGAAGTTGATAAGGCTGAGGGATCTAGCAGTATGCATGAGGATGAATTTTCATTAGATGAGGTACTGTCAACTAAATCAGAAGGATCAAAGCCACTTTTAGATGGATCTAGTGATGGTGGACAGCAGCAAAAGGAGGCTTGGGCACATCGTGGAGGTTCCAAAGGAATTATAGATCACTTCCATGAACTTATTCCTGATATGGCACTTCAGTTTCCCTTTGAATTGGATGCATTTCAGAAGGAGGCTATATATTATCTTGAGAAGGGGGAATCTGTTTTTGTTGCTGCTCACACATCGGCTGGAAAGACGGTGGTGGCAGAATATGCATTTGCTTTAGCATCAAAGCATTGCACTAGGGCTGTATATACTGCTCCGATAAAAACAATCAGCAATCAGAAATATAGGGATTTCTGTGGGAAGTTTGATGTTGGGCTGCTTACTGGTGATGTAACCTTGAGGCCAGAGGCTTCTTGTCTCATCATGACCACAGAAATTTTAAGGTCCATGCTCTATCGAGGTGCAGATATTATTCGGGATATTGAATGGGTTATATTTGACGAAGTGCATTATGTCAATGATGCTGAAAGAGGTGTTGTTTGGGAAGAAGTAATTATAATGCTTCCAAGACACATCAATATCATCCTCCTTTCAGCCACGGTACCTAACACGGTTGAATTTGCTGATTGGATTGGTCGGACAAAGCAAAAGGAAATCCGGGTTACAGGGACAACAAAAAGACCTGTCCCATTGGAGCACTGCCTGTTTTATTCTGGAGAACTTTACAAAATTTGTGAAAGTGAAGCATTTCTGCCTCAGGGACTGAAAGCTGCTAAGGATGCATATAACAAGAAGCATTCAACTGCTGTTGGTGGTGGCTCTGGACGATATTCAGGGACATCAGCAGGTCATGAGAGTACTCAAGTTCAAAAACGTGAAAATGCAGCACGAGTTAAACGTGGAAGTAGTTTCTCCAAAACTTCTAGAGGCTATCAGAATAATGTAAATGGCCAGAACAACTGGGAACTCAGGAGGGCAGAATCTTCTATGTGGTTGATGCTTATTAACAAGCTCTCCAAAAAGTCACTGTTGCCTGTGGTCATATTCTGCTTTTCTAAGAATCGCTGTGATAAATCAGCTGATAACATGACTGGAACTGACCTAACTAGTAGCTCAGAGAAAAGTGAAATACGTGTCTTTTGTGATAAAGCATTTTCAAGGCTGAAAGGATCTGACAGGAATTTACCACAGGTGGTTCGAGTCCAGAATCTTCTTCATAGAGGGATCGGTGTGCATCATGCTGGCCTTCTTCCAATTGTAAAGGAAGTAGTTGAAATGCTATTTTGCCGTGGTGTTATCAAGGTTTTGTTTTCAACAGAGACATTTGCAATGGGTGTCAATGCTCCTGCTAGAACAGTAGTCTTTGATACTTTAAGGAAGTTTGATGGCAAGGAATTTAGGCAGTTACTACCAGGAGAATATACTCAAATGGCTGGTCGTGCTGGAAGAAGAGGTCTTGATAAGATTGGTACTGTTATTCTAATGTGCCGTGATGAAATCCCTGAAGATAGGGATTTAAAGCATGTTATTACTGGAAATGCAACCCGCCTTGAATCTCAATTTCGACTTACCTTTATTATGATCCTCCATCTCCTTCGAGTTGAAGAATTGAAGGTAGAAGATATGCTTAAAAGAAGTTTTGCTGAATTCCATGCTCAGAAAGAACTACCTGAGATGCAAGAACTTTTGAAGCGAAAGCTTAATCAGCCTACAAAAGCTATTGAATGCATAAAGGGTGAGCCAACCATTGAGGAATACTATGAGACATACTCTGAAGCTGAGAAGTACAGCAGCAAAATATCAGATGCAATTTTGCAGTTGTCGAGTGCCCAACAATTTCTTGCTCCTGGAAGAGTAATAGTTGTAAAATCAGAATCAGCCAAGGATCACCTGCTTGGTGTGATTGTGAAAGCTCCTTCTGCAAATTATAAGCAATATATTATTTTAGTGCTCAGGCCTGATTTGCCTCCTCCAGTGGAAAATGCCCCAAGTAGGGGTAATGTGCAAGATAAACCCAGTGACTTCAACCAGGGTTATTTTGTGGTGCCTAAATCTAAACGTGGTTTTGGAGATGAATATCATACCTCTGTTTCAGCTCGTAGAGGAACAGGTGTTATCAACATCACACTGCCACATCATGGTTATGTTAGTGGAATGAGTTATGAGGTTCAAGGAGTTGATAGTAAAGAATTTCAATGCATTTGCAATAAAAAAATGAAAGTTGACCAGGTTGGACTTCTTGAAGATGTTAGCAATGCTGTTTACTCCAAGACTGTTCAGATGCTCCTGGATTTAAGGTCAGATGGAAACAAGTACCCTCCACCCCTGGATCCTGTGAAAGGTTTTTGA 3264 0.4308 MDPIEASQELAFRVGFTGHSGHLRVEPLSTVERSNPLSSLPDFILPPAFPEETPESIKKYIEQTYLSPRLDPDEFSPERVGRQWEFDWFDRAEVPLEPSLPRSVVVPVWEPPFRRQNNVSEQGKWEPKSEEVDVSELMLGDEDSGPLPRASGSAKDFVRGSINNRPFRPGGFDNSQTLDRIIPEGTSTGEWVREILNGGPPQMIPPGFKQGLDLGAFKPYPCSWNVYKDVSLLKSSSDEKLSELSLQFDDLFKKAWEDGVTQEQEEDGIFTSPGCLSEVEPVIVEAEVDKAEGSSSMHEDEFSLDEVLSTKSEGSKPLLDGSSDGGQQQKEAWAHRGGSKGIIDHFHELIPDMALQFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVTLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELYKICESEAFLPQGLKAAKDAYNKKHSTAVGGGSGRYSGTSAGHESTQVQKRENAARVKRGSSFSKTSRGYQNNVNGQNNWELRRAESSMWLMLINKLSKKSLLPVVIFCFSKNRCDKSADNMTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQNLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVILMCRDEIPEDRDLKHVITGNATRLESQFRLTFIMILHLLRVEELKVEDMLKRSFAEFHAQKELPEMQELLKRKLNQPTKAIECIKGEPTIEEYYETYSEAEKYSSKISDAILQLSSAQQFLAPGRVIVVKSESAKDHLLGVIVKAPSANYKQYIILVLRPDLPPPVENAPSRGNVQDKPSDFNQGYFVVPKSKRGFGDEYHTSVSARRGTGVINITLPHHGYVSGMSYEVQGVDSKEFQCICNKKMKVDQVGLLEDVSNAVYSKTVQMLLDLRSDGNKYPPPLDPVKGF 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3074 1087 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 147 1057 - -
Prci2g3074 1087 MobiDBLite consensus disorder prediction 574 616 - -
Prci2g3074 1087 MobiDBLite consensus disorder prediction 315 329 - -
Prci2g3074 1087 MobiDBLite consensus disorder prediction 312 334 - -
Prci2g3074 1087 FunFam DExH-box ATP-dependent RNA helicase DExH11 824 891 - -
Prci2g3074 1087 Pfam DEAD/DEAH box helicase 364 511 IPR011545 GO:0003676|GO:0005524
Prci2g3074 1087 Gene3D - 324 532 IPR027417 -
Prci2g3074 1087 SMART helicmild6 704 790 IPR001650 -
Prci2g3074 1087 SMART ultradead3 357 537 IPR014001 -
Prci2g3074 1087 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 639 837 IPR001650 -
Prci2g3074 1087 Gene3D - 533 823 IPR027417 -
Prci2g3074 1087 PIRSF SKI2 48 1087 IPR016438 GO:0003723|GO:0003724|GO:0006401
Prci2g3074 1087 Gene3D - 824 892 - -
Prci2g3074 1087 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 369 524 IPR014001 -
Prci2g3074 1087 Pfam rRNA-processing arch domain 845 1085 IPR025696 -
Prci2g3074 1087 MobiDBLite consensus disorder prediction 578 594 - -
Prci2g3074 1087 CDD SF2_C_Ski2 639 802 - -
Prci2g3074 1087 Pfam Ski2 N-terminal region 81 218 IPR040801 -
Prci2g3074 1087 FunFam ATP-dependent RNA helicase SKI2 324 532 - -
Prci2g3074 1087 FunFam DExH-box ATP-dependent RNA helicase DExH11 533 823 - -
Prci2g3074 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 803 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3074 Prci-Chr2 38636258 38650339 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3074 K12599 - gmx:100788432 1712.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g3074 2 38636258 38650339 Prci2g3074 2 38636258 38650339 ECH