Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2058 ATGTCTCTGCGGCTGGTAGCAGCAAATTTACTCAAAAAGTTTCGTTTTCCTTCTCGCAATGCTTCTTCTTCTTCTGTAATAATCTCTAATGCGTTGCCTATCTCAATTCCTGGCAAAAGTGTTACCCGTCATTGGTATGGAACTGGTGCATATGGTTGGAGGATAGATTCTAGTAGCCATTGTCTATGGATGGTGGTATATGGACATCTTGCATTAATTCTTGGAATCAATGCCAACCCTGTGTTTGCCAAAGAAGCACCAATGGAAGCAGTTCCTGATAGTGACACTGAAACGGATGACATGATTGGATTGCAAAAAGTTGAGGATGGCTCTGTAGTATCAAATATACATACATCGAAATGGAGGGTCTTTACTGATAAAGGGAGAGAATTTTTTCTTCAGGGAAAAATAGATGAAGCTGAAAAGCTCTTCCTTGCTGCAGTGCAAGAAGCTAAAGAAGGTTTTGGCCGGAGAGACCCACATGTTGCATCTGCATGCAACAATCTGGCCGAGTTATACAGAGTCAGGAAGGCTTTTGACAAAGCAGAGCCACTATATTTGGAAGCTATCAGCATATTGGAGGAGTCATTTGGACCTGAAGATATACGAGTGGGAACTGCGGCTCATAACCTTGGGCAGTTCTTCCTTGGACAGAGGAAGTTGGAAGAAGCTCATGGTTACTATGCGATAAAAAGGCGGGTTCTGGGACATGAACATCCAGACTGTGCTGATACGATGTATCATCTAGGAGTGGTTCTGCATCTTCAAGGAAAGGCAACGGATGCTGAGGCCATTATTCAGGACTCTATAAGAATGCTAGAGGAAGGTGGTGAAGGAGAGTCCATTATATGCGTTAGAAGACTTCGATACCTTTCTCAGATATATATGAAGTCACATCGGCATGCTGAAGCTGAGATGATTCAAAGGAAGATTCTACACAAATTGGAACTATTAAAGGGGTGGAATTCCTTGGACACTATCGCTGTGGCTGAAAGTTTGGCTCTGACTCTGCAAGCGTCTAATAATTTAAAAGATTCGCAAGATCTTCTTGAAAGATGCCTTAATGCCCGGAAAGACATACTTCCTCACGATCATATTCAGATTGGTGCAAACCTCCTGCATCTAGCAAGGGGGGTGCTGCTCAGCATCAGGCAACTGCACAAGTGGGATGCTATTGGAGAAGCTGAGTTTGATAGGGCAAAGGATCACTTGGACAATTCCATGAGGATTGCACGTCAAGTTTTAAATAAATTATTGAAACAAAAAGTCAACACAAAAAATTACAGTGCACTGGGACGTTCTATGAAGGAAAGACAAGCTGCATTAATCATACTGCTGCAATCACTCAGTACTTTGGCATCATTGGAGTTAGCAAAGCAAGAATTGCTGGGAATTCAGGAAGAGCATTTACATCTTGAAGCTAGGAAGGCACTTCTTCAATGCGTTTCCTCTTATAGGGAGTATGTATCTGAGAAGTCAGTAGCTGATTCCACTGAAATAAAGAAGGATTATCTTTCATGTTTAAAGCGCGCTCAAAACTTGCTTGGCAGTAAACTCGCTGAGGAGCCAACCAGTTTAGAGGATTCCTGA 1590 0.4252 MSLRLVAANLLKKFRFPSRNASSSSVIISNALPISIPGKSVTRHWYGTGAYGWRIDSSSHCLWMVVYGHLALILGINANPVFAKEAPMEAVPDSDTETDDMIGLQKVEDGSVVSNIHTSKWRVFTDKGREFFLQGKIDEAEKLFLAAVQEAKEGFGRRDPHVASACNNLAELYRVRKAFDKAEPLYLEAISILEESFGPEDIRVGTAAHNLGQFFLGQRKLEEAHGYYAIKRRVLGHEHPDCADTMYHLGVVLHLQGKATDAEAIIQDSIRMLEEGGEGESIICVRRLRYLSQIYMKSHRHAEAEMIQRKILHKLELLKGWNSLDTIAVAESLALTLQASNNLKDSQDLLERCLNARKDILPHDHIQIGANLLHLARGVLLSIRQLHKWDAIGEAEFDRAKDHLDNSMRIARQVLNKLLKQKVNTKNYSALGRSMKERQAALIILLQSLSTLASLELAKQELLGIQEEHLHLEARKALLQCVSSYREYVSEKSVADSTEIKKDYLSCLKRAQNLLGSKLAEEPTSLEDS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2058 529 Gene3D Tetratricopeptide repeat domain 124 280 IPR011990 GO:0005515
Prci2g2058 529 Coils Coil 455 475 - -
Prci2g2058 529 SUPERFAMILY TPR-like 238 360 IPR011990 GO:0005515
Prci2g2058 529 Pfam Tetratricopeptide repeat 328 366 - -
Prci2g2058 529 Pfam Tetratricopeptide repeat 243 275 - -
Prci2g2058 529 SUPERFAMILY TPR-like 121 270 IPR011990 GO:0005515
Prci2g2058 529 Gene3D Tetratricopeptide repeat domain 281 513 IPR011990 GO:0005515
Prci2g2058 529 SMART tpr_5 163 196 IPR019734 GO:0005515
Prci2g2058 529 SMART tpr_5 243 276 IPR019734 GO:0005515
Prci2g2058 529 SMART tpr_5 121 154 IPR019734 GO:0005515
Prci2g2058 529 Pfam Tetratricopeptide repeat 165 228 - -
Prci2g2058 529 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2058 Prci-Chr2 15718334 15731576 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2058 - - gmx:100813040 690.263