Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2035 ATGGCGACTGAACCTCCCTCGCTTCCTCCTTACCCAGAGATGATAATGAAAGCGCTGGAGGCTCTCAACGAACCGAACGGTGCGAACAAATCGGCGATCGCGAAGCACATAGAGGCAACCTACGGCGAGTTGCCGGCGAGCCACTCGACGTTGCTGTCTCACCATCTCAACAGGATGAAGGAGAGTGGGGAGCTTGTGTTCGCAAAGAACAACTACATGAAACCCGACCCGAATGCCCCGCCCAAGCGAGGTCGCGGGAGGCCGCCCAAGCCCAAGGCTCCTCTGCCTCCGGGTACCGTGCTTTCCCCACCGAGGCCCAGAGGCCGCCCACCTAAGGACCCAAGTGCTCCGCCCAAGCCCAAAACTTCAACCGGAAGTGGCAGGCCCAGAGGAAGGCCCAAGAAAGTGGCCCGAACTTCACCGGAAAATGTCACTGTTACAAGCAGGCCCAGAGGCCGGCCTCCAAAGGAGAAGCCCGCGTTGACTGAAGTGAGCGTTGGACAATAG 507 0.5957 MATEPPSLPPYPEMIMKALEALNEPNGANKSAIAKHIEATYGELPASHSTLLSHHLNRMKESGELVFAKNNYMKPDPNAPPKRGRGRPPKPKAPLPPGTVLSPPRPRGRPPKDPSAPPKPKTSTGSGRPRGRPKKVARTSPENVTVTSRPRGRPPKEKPALTEVSVGQ 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2035 168 PANTHER HISTONE H1 7 159 - -
Prci2g2035 168 MobiDBLite consensus disorder prediction 67 168 - -
Prci2g2035 168 SUPERFAMILY "Winged helix" DNA-binding domain 4 83 IPR036390 -
Prci2g2035 168 Gene3D - 3 87 IPR036388 -
Prci2g2035 168 PRINTS High mobility group protein (HMGY) signature 80 92 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Prci2g2035 168 PRINTS High mobility group protein (HMGY) signature 116 135 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Prci2g2035 168 SMART AT_hook_2 82 94 IPR017956 GO:0003677
Prci2g2035 168 SMART AT_hook_2 148 160 IPR017956 GO:0003677
Prci2g2035 168 SMART AT_hook_2 127 139 IPR017956 GO:0003677
Prci2g2035 168 SMART AT_hook_2 104 116 IPR017956 GO:0003677
Prci2g2035 168 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 7 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci2g2035 168 Pfam linker histone H1 and H5 family 9 69 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci2g2035 168 FunFam HMG-Y-related protein A 4 86 - -
Prci2g2035 168 SMART h15plus2 5 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci2g2035 168 PRINTS AT-hook-like domain signature 102 113 IPR017956 GO:0003677
Prci2g2035 168 PRINTS AT-hook-like domain signature 125 135 IPR017956 GO:0003677
Prci2g2035 168 PRINTS AT-hook-like domain signature 82 92 IPR017956 GO:0003677
Prci2g2035 168 MobiDBLite consensus disorder prediction 90 118 - -
Prci2g2035 168 Pfam AT hook motif 127 137 IPR017956 GO:0003677
Prci2g2035 168 Pfam AT hook motif 104 115 IPR017956 GO:0003677
Prci2g2035 168 Pfam AT hook motif 82 90 IPR017956 GO:0003677
Prci2g2035 168 Pfam AT hook motif 149 159 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2035 Prci-Chr2 15499078 15500148 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2035 - - jcu:105638603 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g2035 2 15499078 15500148 Prci2g2035 2 15499078 15500148 CCT
Prci2g2035 2 15499078 15500148 Prci2g2035 2 15499078 15500148 ECH