Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2002 ATGGACGACGAAACGCGTCGGATCTTCAACAAGTTCGACATTAACGGCGACGGTAAGATCTCCAGCTCTGAGCTCAAGAAGATGCTGCATACACTCGACTCCAAAACGACGTCGAAAGAGATCAAGCGCATCATGGCCGAGCTCGACAAGAACGGCGACGGCTACATTGATCTCAACGAGTTCGCCGACTTCCATCGTTCTGGAGGAGAAAAGCTCGCCGACTCGAGGGAGCTCCGTGACGCCTTTGATCTGTACGACTTGGACAAGAACGGACTGATCTCGGTCTCTGAGTTGCATGCGGTGCTGCGCAAGTTAGGGGAGAAGAGATCCTTGAGCGACTGCCGGAAAATTATCAGTTCCGTCGACACCGACGGCGATGGCAACGTCAATTTCGAGGAGTTCAAGAGGATGATGACTCGCGCCTAG 426 0.5352 MDDETRRIFNKFDINGDGKISSSELKKMLHTLDSKTTSKEIKRIMAELDKNGDGYIDLNEFADFHRSGGEKLADSRELRDAFDLYDLDKNGLISVSELHAVLRKLGEKRSLSDCRKIISSVDTDGDGNVNFEEFKRMMTRA 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2002 141 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Prci2g2002 141 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Prci2g2002 141 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Prci2g2002 141 SUPERFAMILY EF-hand 4 140 IPR011992 -
Prci2g2002 141 ProSitePatterns EF-hand calcium-binding domain. 86 98 IPR018247 -
Prci2g2002 141 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Prci2g2002 141 Gene3D - 1 67 - -
Prci2g2002 141 FunFam Calmodulin 1 1 141 - -
Prci2g2002 141 ProSiteProfiles EF-hand calcium-binding domain profile. 109 141 IPR002048 GO:0005509
Prci2g2002 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 77 139 - -
Prci2g2002 141 SMART efh_1 4 32 IPR002048 GO:0005509
Prci2g2002 141 SMART efh_1 77 105 IPR002048 GO:0005509
Prci2g2002 141 SMART efh_1 40 68 IPR002048 GO:0005509
Prci2g2002 141 SMART efh_1 113 141 IPR002048 GO:0005509
Prci2g2002 141 ProSitePatterns EF-hand calcium-binding domain. 122 134 IPR018247 -
Prci2g2002 141 Gene3D - 68 141 - -
Prci2g2002 141 ProSiteProfiles EF-hand calcium-binding domain profile. 73 108 IPR002048 GO:0005509
Prci2g2002 141 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
Prci2g2002 141 Pfam EF-hand domain pair 77 138 IPR002048 GO:0005509
Prci2g2002 141 CDD EFh 77 139 IPR002048 GO:0005509
Prci2g2002 141 CDD EFh_PI-PLC 6 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2002 Prci-Chr2 15174950 15175715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2002 3 139 EF-hand Containing Proteins AT1G18210 51.825 5.37e-47 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g2002 K13448 - qsa:O6P43_014310 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g2002 2 15174950 15175715 Prci2g2002 2 15174950 15175715 CCT