LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g2000	ATGGCTGCGTTGGAGCCTAGGAATACGCCGAACCCGAGCTCTACCCTCACAGTGCCCCGTCCAGACCAGCCTTCTTCTTCATATTCTTTACCTCAGCCTGAGGCCTCGGTTCCTGCTCCGTCTTCGTCTGAACCGGGACCTTCTACGCCAGCTCGCCTCGCCTCGCCGGAGCCTTCTGGCGCTCGTGTTCCAGAGCCTTTGATGCACAAAAATCGGTTACAAGAGTATGCTCAGAGGTCAAACATACCACTTCCCATTTATCAAACTATCAATGAGGGAGTTGTGCATGCTCCAAAGTTTAGATCAACGGTTTGGGTTGATGGAAAGCACTATACTTCCGAAAATGTTTTCTCTGCTCGAAAAGCGGCTGAGCAGGATGCTGCCAAACTTGCATATGAGCACATAGTGACAAATATGAAAGATGAAGGGCTTCCTGATATAAATATTCTTGAGAAAACTATGGTTTTCAAGTCCATCTTATATGAATATGCTGCCAAGATGAATCTGGATAAAGTTACATATCGCACTGATCAGTTGGAAGGACATCCTTTTTTTATATCATCTTTGGTTTTTAATGGTAAACGCTATACTGGTTGTCCAGCTAGAACCAAAAAGGAGGCTGAGCAATTGGCTGCACGAACTGCTATTCTTTCAATTCTAAATGATTCTATGTCTGGAACACGTCTTTCTGAGATAATAAAGTCAAAATTCAAATGTTGTGCTGCAATCATCAATGTGAAGGACTCACAACATACAAGTACTTTATCACATATGGGTAGCTCAGGAAATGTTTCTGTTAGTGCCGCTCCTTTGGCAGCTAATAATAATGAAAATAGTAAAGAAATTGAGGTTGTGCATCCTGAGCCCTCTCCTAGAGGGCATTCGCCTCAGCGAGAATTCCAGATGTCAAAACAAGAAAAATGCCCTGAAGACTCCAAGCTTTCAAATCTGTCTCAACAAGCAGTTGCACCACAGCATATTGATGATAGTTCAAGTTTGAAGAAGCGCAAAAGGAACAAGAAAAAGGCTAATAAGAAGTCCCTGCCGGATTCTCTGCTGCCAGTTGCTGCTTATCCTCTCCACCAAGCCCCTTCTCCAGCTACATTACCATTTCCTTTCAGCCAGCCTAGTTGTTCAGTGGCGCAGTAA	1149	0.4413	MAALEPRNTPNPSSTLTVPRPDQPSSSYSLPQPEASVPAPSSSEPGPSTPARLASPEPSGARVPEPLMHKNRLQEYAQRSNIPLPIYQTINEGVVHAPKFRSTVWVDGKHYTSENVFSARKAAEQDAAKLAYEHIVTNMKDEGLPDINILEKTMVFKSILYEYAAKMNLDKVTYRTDQLEGHPFFISSLVFNGKRYTGCPARTKKEAEQLAARTAILSILNDSMSGTRLSEIIKSKFKCCAAIINVKDSQHTSTLSHMGSSGNVSVSAAPLAANNNENSKEIEVVHPEPSPRGHSPQREFQMSKQEKCPEDSKLSNLSQQAVAPQHIDDSSSLKKRKRNKKKANKKSLPDSLLPVAAYPLHQAPSPATLPFPFSQPSCSVAQ	382

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g2000	382	SUPERFAMILY	dsRNA-binding domain-like	148	219	-	-
	Prci2g2000	382	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	155	221	IPR014720	-
	Prci2g2000	382	MobiDBLite	consensus disorder prediction	7	37	-	-
	Prci2g2000	382	MobiDBLite	consensus disorder prediction	363	382	-	-
	Prci2g2000	382	Pfam	Double-stranded RNA binding motif	157	216	IPR014720	-
	Prci2g2000	382	Pfam	Double-stranded RNA binding motif	70	134	IPR014720	-
	Prci2g2000	382	SUPERFAMILY	dsRNA-binding domain-like	69	135	-	-
	Prci2g2000	382	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	68	137	IPR014720	-
	Prci2g2000	382	SMART	DRBM_3	156	220	IPR014720	-
	Prci2g2000	382	SMART	DRBM_3	69	136	IPR014720	-
	Prci2g2000	382	MobiDBLite	consensus disorder prediction	1	65	-	-
	Prci2g2000	382	MobiDBLite	consensus disorder prediction	284	352	-	-
	Prci2g2000	382	MobiDBLite	consensus disorder prediction	312	327	-	-
	Prci2g2000	382	Gene3D	-	58	141	-	-
	Prci2g2000	382	Gene3D	-	146	224	-	-
	Prci2g2000	382	PANTHER	RIBONUCLEASE III	54	342	IPR011907	GO:0003723\|GO:0004525\|GO:0006364

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g2000	Prci-Chr2	15130359	15135650	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g2000	-		-	pcin:129303002	722.62

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Prci2g2000	2	15130359	15135650	Prci2g2000	2	15130359	15135650	CCT
	Prci2g2000	2	15130359	15135650	Prci2g2000	2	15130359	15135650	ECH