Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1900 ATGGCTTATAAAGTCGATCATGAATACGACTATCTTTTTAAGATAGTATTGATTGGAGATTCTGGTGTTGGAAAATCCAATATCCTTTCTAGGTTTACGCGAAATGAGTTCTGTTTGGAATCCAAATCTACCATTGGGGTGGAATTCGCTACGAGGACGTTACAGGTGGAGGGGAAGACCGTGAAGGCACAAATATGGGACACTGCAGGTCAAGAGAGATACCGAGCAATCACAAGCGCCTACTATAGAGGAGCTGTTGGAGCCTTGTTGGTGTATGACATAACAAAAAGGCAAACATTTGAAAATGTGCAGAGGTGGCTTCGCGAACTAAGGGACCATGCAGATTCTAACATTGTTATCATGATGGCTGGAAATAAATCTGACCTGAATCATTTAAGAGCAGTCGCTACTGAAGATGCTCAAAGTTTGGCTGAGAAGGAGAATCTATCTTTTCTAGAGACTTCAGCATTAGAGGCCTATAATGTTGAGAAGGCATTCCAAACCATCTTGTTGGATATATACCAAATTATGAGTAAAAAGGCCCTGGCAGCACAAGAAGCAACTTCCTCTACTGGCCTTCCTCAAGGGACAACCATAAATGTCTCAAATTTGTCAGGTAACGTGGAAAAGAAATCTTGTTGCTCAAATTAA 651 0.4132 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVATEDAQSLAEKENLSFLETSALEAYNVEKAFQTILLDIYQIMSKKALAAQEATSSTGLPQGTTINVSNLSGNVEKKSCCSN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1900 216 ProSiteProfiles small GTPase Ras family profile. 1 216 IPR001806 GO:0003924|GO:0005525
Prci2g1900 216 SMART arf_sub_2 1 180 - -
Prci2g1900 216 ProSiteProfiles small GTPase Rab1 family profile. 8 214 - -
Prci2g1900 216 SMART rho_sub_3 15 175 IPR001806 GO:0003924|GO:0005525
Prci2g1900 216 SMART ran_sub_2 18 204 - -
Prci2g1900 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Prci2g1900 216 PANTHER DRAB11-RELATED 6 202 - -
Prci2g1900 216 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Prci2g1900 216 Gene3D - 5 214 IPR027417 -
Prci2g1900 216 SMART rab_sub_5 13 176 - -
Prci2g1900 216 PRINTS Transforming protein P21 ras signature 151 173 - -
Prci2g1900 216 PRINTS Transforming protein P21 ras signature 54 76 - -
Prci2g1900 216 PRINTS Transforming protein P21 ras signature 13 34 - -
Prci2g1900 216 PRINTS Transforming protein P21 ras signature 116 129 - -
Prci2g1900 216 PRINTS Transforming protein P21 ras signature 36 52 - -
Prci2g1900 216 CDD Rab11_like 10 174 - -
Prci2g1900 216 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Prci2g1900 216 SMART ras_sub_4 10 176 - -
Prci2g1900 216 NCBIfam small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Prci2g1900 216 FunFam ras-related protein RABA1f 5 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1900 Prci-Chr2 14334352 14336754 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1900 K07904 - gmx:100799595 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1900 2 14334352 14336754 Prci2g1900 2 14334352 14336754 CCT