Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1829 ATGGGAACCTACAACTACAAAATATTCAAATGCTTCAACCTTAAGTTCACTGTCTCGGAGCCGGGCCCACCCGAGGACGTCAAGTACGTCTTTTACAAGTTTTCCTCCGGCGCCGATCACTTGTCCGCCGATCAGCTAGTCAAATTCCTGGTGAAGCACCAATGCGAATCGGACTCGACCTCTTCAGATTCCACCCAAATAGTTGAGAAGATCCTGCAATTGCGGAAGCAGAATGAGGAGATTGAAGCTACGGAGGCCACGAGCTCTGTTGAGGGAATGAGCCTCGACGAATTCTTCCATTTTCTACTCCTCGATGATTTCAATGCCCCCTTAAAATCCCAAGTGCATCATGATATGAATGCTCCGCTGTCACATTATTTCATATATACAGGACACAATTCTTATCTGACCGGGAATCAACTGAGCAGTGATTGTAGTGATGTGCCAATTATAAAGTCTTTGCTTGATGGTGTGCGAGTAATTGAACTAGATTTATGGCCAAATTCAACTCGAGATGATGTTATTGTGGTTCATGGAAGGACTCTCACCTCTCCTGTTGCACTCATTCAATGTTTGAAGTCAATAAAAGAGCATGCATTTGTTAAATCTCATTACCCACTGATTATAACTTTAGAAGCCCACCTCCCGACAGACCTTCAAGCTAAAGTTGCAGAGATGGTATCACAAATATTTGGAGAAGCCCTTTACTATCCTGAGACGGATGGTATAGCAGAATTCCCCTCACCAGAATCATTGAAAGATCGAATTCTTATATCAACCAAACCACCAAAAGAGTATCTTGAATCTGAATGTTCATCGCCAACAGGTCAAATGGATGAACCAGAAACTGATAGCAAGAATGAAAGCCATGAAGAAGTGGAAGATTTGAATGCAAGTGAAGAAAAATCACTCCAGCAATGTGCGCCTGAATATGGGCGCTTAATTACAATCCATGCTGGGAAACCTAAGGGTCAAGCGAAGGATTATTTAAGTATTGTTGGTGATGTCAGACGCCTAAGCATGTGCGAACAGATGCTTCAAAAGACTTGTGCATCTCATGGAACCGAAATTATTAGGTTCACACAGAAGAACATTCTCAGGGTTTATCCAAAGGGAACACGTGTCTCTTCCTCAAATTACAGACCACATATTGGGTGGAATTATGGGGCTCAGATGGTTGCATTCAACATGCAGGGGTATGGCAGATCACTATGGTTCATGCAAGGGATGTTCAGAGCAAATGGAGGTTGTGGTTATGTGAAAAAGCCCGAGTTATTGTTGTTGAGAGGTCCCCATGGTGAGGTTTTCGATCCTACCAGAACACTGCCGGTGAAGAAGATTCTGAAGGTTAAAGTATATTTAGGGACTGGATGGAGCTCAGATTTCAGCCAAACACACTTTGATTCATTCTCCCCACCAGACTTTTACACAAAAGTTTGTATTGTTGGAGTAGATAATGATAAGGTCAAGAAGAAAACAAAGGTAGTAGATGATGACTGGTTTCCCGTTTGGGATGAAGGGTTTGAATTCCCCCTGACTGTTCCAGAGTTGGCTTTGCTGAGGATAGAAGTTCGAGAGTATGACAGGCATGAAACGGATGACTTTGGGGGGCAGACATGTTTGCCGGTTTCTGAGCTAAGACCAGGATTCCGGTCAGTTCCTTTATATGACAAAAAGGGCAGCCAACTCAAATCTGTGAGGCTTTTCATGCATTTTCAGTTTGTTTCAAGCTAA 1734 0.4314 MGTYNYKIFKCFNLKFTVSEPGPPEDVKYVFYKFSSGADHLSADQLVKFLVKHQCESDSTSSDSTQIVEKILQLRKQNEEIEATEATSSVEGMSLDEFFHFLLLDDFNAPLKSQVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKSLLDGVRVIELDLWPNSTRDDVIVVHGRTLTSPVALIQCLKSIKEHAFVKSHYPLIITLEAHLPTDLQAKVAEMVSQIFGEALYYPETDGIAEFPSPESLKDRILISTKPPKEYLESECSSPTGQMDEPETDSKNESHEEVEDLNASEEKSLQQCAPEYGRLITIHAGKPKGQAKDYLSIVGDVRRLSMCEQMLQKTCASHGTEIIRFTQKNILRVYPKGTRVSSSNYRPHIGWNYGAQMVAFNMQGYGRSLWFMQGMFRANGGCGYVKKPELLLLRGPHGEVFDPTRTLPVKKILKVKVYLGTGWSSDFSQTHFDSFSPPDFYTKVCIVGVDNDKVKKKTKVVDDDWFPVWDEGFEFPLTVPELALLRIEVREYDRHETDDFGGQTCLPVSELRPGFRSVPLYDKKGSQLKSVRLFMHFQFVSS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1829 577 MobiDBLite consensus disorder prediction 281 299 - -
Prci2g1829 577 SMART plcx_3 117 261 IPR000909 -
Prci2g1829 577 CDD C2_PLC_like 445 574 - -
Prci2g1829 577 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 339 424 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Prci2g1829 577 Gene3D C2 domain 442 577 IPR035892 -
Prci2g1829 577 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 447 574 IPR035892 -
Prci2g1829 577 Gene3D - 23 113 - -
Prci2g1829 577 Gene3D Phosphatidylinositol (PI) phosphodiesterase 114 439 IPR017946 GO:0006629|GO:0008081
Prci2g1829 577 MobiDBLite consensus disorder prediction 265 302 - -
Prci2g1829 577 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 117 261 - -
Prci2g1829 577 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 340 426 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Prci2g1829 577 SUPERFAMILY EF-hand 5 119 IPR011992 -
Prci2g1829 577 Pfam C2 domain 448 548 IPR000008 -
Prci2g1829 577 ProSiteProfiles C2 domain profile. 431 557 IPR000008 -
Prci2g1829 577 SUPERFAMILY PLC-like phosphodiesterases 117 427 IPR017946 GO:0006629|GO:0008081
Prci2g1829 577 SMART C2_3c 447 555 IPR000008 -
Prci2g1829 577 Pfam Phosphoinositide-specific phospholipase C, efhand-like 25 106 IPR015359 -
Prci2g1829 577 Coils Coil 67 87 - -
Prci2g1829 577 FunFam Phosphoinositide phospholipase C 442 575 - -
Prci2g1829 577 PRINTS Phospholipase C signature 148 168 IPR001192 GO:0035556
Prci2g1829 577 PRINTS Phospholipase C signature 122 140 IPR001192 GO:0035556
Prci2g1829 577 PRINTS Phospholipase C signature 386 404 IPR001192 GO:0035556
Prci2g1829 577 PRINTS Phospholipase C signature 245 262 IPR001192 GO:0035556
Prci2g1829 577 PRINTS Phospholipase C signature 365 386 IPR001192 GO:0035556
Prci2g1829 577 PRINTS Phospholipase C signature 541 551 IPR001192 GO:0035556
Prci2g1829 577 SMART plcy_3 311 427 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Prci2g1829 577 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 9 574 IPR001192 GO:0035556
Prci2g1829 577 FunFam Phosphoinositide phospholipase C 114 440 - -
Prci2g1829 577 Pfam Phosphatidylinositol-specific phospholipase C, X domain 119 261 IPR000909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1829 Prci-Chr2 13506881 13511719 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1829 2 574 Acyl Lipid Metabolism Gene Families AT2G40116 57.331 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1829 K05857 - gmx:100777010 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1829 2 13506881 13511719 Prci2g1829 2 13506881 13511719 CCT
Prci2g1829 2 13506881 13511719 Prci2g1829 2 13506881 13511719 ECH