Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1828 ATGTCGAAACAGACTTACAGAGTCTGCTGCTGCCACCGGGGGTTCAGGCTTCGTGGCTCCGAGGCACCGCCGGAGATCAAGTCGCTTTTTGATCACTACTCTGAGAATGGCTTTATGACTGCTGCTCACCTCCAGAGGTTCTTGATTGAGGTCCAGAAAGAAGAGAAGGCCACAGAAGATGAAGCCCAGGCCATCATCGACGGCCTCAAGCATATGATTAGCTTTCATCGGAGGGTTCTCGCTCTTGACGGTTTCTTCAAGTATCTCTTCAGTGATCAAAACCAACCTCTCTCACCTTCTCTTGGGGTACACCATGATATGACTGCACCGTTGTCTCATTATTTCATATTCACCGGACACAATTCCTACCTCACTGGAAATCAACTCAGTAGTGATTGCAGTGATGTTCCCATTGTACGTGCCCTGCAAAGAGGTGTAAGAGTGATAGAGCTGGACATTTGGCCCAATGATACAAAGGATGGTGTGCATGTTCTTCATGGAAGGACGCTGACTGCTCCTGTAGAGCTTATCAAATGTCTGAGGTCCATTAAGGAGCATGCCTTTTCTGTGTCTGAATATCCAGTTGTAATAACTCTAGAAGACCATCTTACTCCAGATCTGCAGGCTAAAGTGGCTAAGATGGTCACTCAAACATTTGGAGACATTCTATTTTTGCCTGGCACGGAATGCTTGAAGGAATTTCCTTCTCCAGAATCACTTAAAAGGAGGATTATTATATCAACCAAACCGCCTAAGGAGTACCTTGAGGCTAAAGAAGTAAAGGAAAGTGGGGACGAGACACTGAAGGCAAAGACCTCAGGTGATGAAGAAGCTTGGGGGAAGGAAGTCCCAGGCTTGAAAGCTGGCGCTTTAGCTGATAACAAGAACCATGTGGATGAAGAAGAGGTTATTGAAGAGGAGGATCTTGATGAAGCAGATAAGTCACATCAAAATGGAGCTCCCGAATATAGGCGTTTGATTGCCATACATGCTGGAAAACCCAAAGGTGGAATAGATGAACTTCTGAAAGTGGATCCTGATAAAGTGCGACGTCTAAGCTTAAGTGAGCAAGAGCTTGAGAAAATGTCTGTAACTCATGGCAAAGAAATTGTCAGGTTTACTCAGCGGAATATCCTGAGGGTCTATCCAAAAGGTACACGCATTGACTCATCAAATTATAACCCACTAATTGGGTGGATGCATGGAGCTCAAATGGTTGCATTTAATATGCAGGGTTATGGGAGATCACTTTGGGTGATGCAAGGAATGTTTAAAGCCAATGGTGGATGTGGTTATGTTAAAAAACCAGATTTCCTACTGAAGACTTTCCCGAATAATGAGTTCTTTGATCCTAAAGCTACGTTACCTGTTAAGACTACATTGAAGGTGACCGTATACATGGGAGAAGGATGGCATAATGATTTCCATCAAACCCACTTCGATCAATTCTCACCTCCGGACTTCTACACAAGAGTGGGAATAGCAGGAGTACCAGGTGATAGTGTGATGAAGAGGACAAAAGCAATAGAGGACAATTGGTTTCCTACATGGAACGAGACATTCGAATTGCCTCTCACCGTTCCAGAACTGGCAGTGCTTCGAATAGAAGTTCATGAGTACGATATGTCAGAAAAAGATGACTTTGGTGGCCAAACATGCCTACCTGTTCCCGAGCTAAGAAGTGGAATTCGAGCAGTTCCACTACATAGCCGCAAGGGTGAGAAGTACAACTCCGTGAAGCTCCTTATGCGCTTTGAGTTTCTGTGA 1767 0.4477 MSKQTYRVCCCHRGFRLRGSEAPPEIKSLFDHYSENGFMTAAHLQRFLIEVQKEEKATEDEAQAIIDGLKHMISFHRRVLALDGFFKYLFSDQNQPLSPSLGVHHDMTAPLSHYFIFTGHNSYLTGNQLSSDCSDVPIVRALQRGVRVIELDIWPNDTKDGVHVLHGRTLTAPVELIKCLRSIKEHAFSVSEYPVVITLEDHLTPDLQAKVAKMVTQTFGDILFLPGTECLKEFPSPESLKRRIIISTKPPKEYLEAKEVKESGDETLKAKTSGDEEAWGKEVPGLKAGALADNKNHVDEEEVIEEEDLDEADKSHQNGAPEYRRLIAIHAGKPKGGIDELLKVDPDKVRRLSLSEQELEKMSVTHGKEIVRFTQRNILRVYPKGTRIDSSNYNPLIGWMHGAQMVAFNMQGYGRSLWVMQGMFKANGGCGYVKKPDFLLKTFPNNEFFDPKATLPVKTTLKVTVYMGEGWHNDFHQTHFDQFSPPDFYTRVGIAGVPGDSVMKRTKAIEDNWFPTWNETFELPLTVPELAVLRIEVHEYDMSEKDDFGGQTCLPVPELRSGIRAVPLHSRKGEKYNSVKLLMRFEFL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1828 588 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 460 587 IPR035892 -
Prci2g1828 588 Gene3D Phosphatidylinositol (PI) phosphodiesterase 102 452 IPR017946 GO:0006629|GO:0008081
Prci2g1828 588 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 105 249 - -
Prci2g1828 588 SMART C2_3c 460 568 IPR000008 -
Prci2g1828 588 SMART plcy_3 323 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Prci2g1828 588 Pfam Phosphoinositide-specific phospholipase C, efhand-like 25 94 IPR015359 -
Prci2g1828 588 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 352 438 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Prci2g1828 588 PRINTS Phospholipase C signature 399 417 IPR001192 GO:0035556
Prci2g1828 588 PRINTS Phospholipase C signature 110 128 IPR001192 GO:0035556
Prci2g1828 588 PRINTS Phospholipase C signature 554 564 IPR001192 GO:0035556
Prci2g1828 588 PRINTS Phospholipase C signature 378 399 IPR001192 GO:0035556
Prci2g1828 588 PRINTS Phospholipase C signature 233 250 IPR001192 GO:0035556
Prci2g1828 588 PRINTS Phospholipase C signature 136 156 IPR001192 GO:0035556
Prci2g1828 588 SUPERFAMILY EF-hand 23 99 IPR011992 -
Prci2g1828 588 Gene3D C2 domain 455 588 IPR035892 -
Prci2g1828 588 Gene3D - 21 100 - -
Prci2g1828 588 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 21 587 IPR001192 GO:0035556
Prci2g1828 588 SUPERFAMILY PLC-like phosphodiesterases 105 441 IPR017946 GO:0006629|GO:0008081
Prci2g1828 588 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 353 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Prci2g1828 588 Pfam C2 domain 460 562 IPR000008 -
Prci2g1828 588 Pfam Phosphatidylinositol-specific phospholipase C, X domain 107 249 IPR000909 -
Prci2g1828 588 CDD PI-PLCc_plant 104 427 - -
Prci2g1828 588 SMART plcx_3 105 249 IPR000909 -
Prci2g1828 588 FunFam Phosphoinositide phospholipase C 455 588 - -
Prci2g1828 588 ProSiteProfiles C2 domain profile. 439 570 IPR000008 -
Prci2g1828 588 CDD C2_PLC_like 458 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1828 Prci-Chr2 13487414 13492803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1828 1 588 Acyl Lipid Metabolism Gene Families AT3G55940 67.508 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1828 K05857 - qsa:O6P43_013858 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1828 2 13487414 13492803 Prci2g1828 2 13487414 13492803 CCT
Prci2g1828 2 13487414 13492803 Prci2g1828 2 13487414 13492803 ECH