Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1813 ATGGCGGCCGCGAATGCTCCGATCGCCATGAGAGAGGCCCTAACTTTGCCAAGCGTGGGCATCAATCCGCAATTCATCACTTTTACGCATGTGACGATGGAGTCTGAAAAGTACATATGCGTACGAGAAACTTCTCCGCAGAATAGTGTGGTTATAATCGATATGAACATGCCGATGCAACCTTTGAGAAGGCCCATTACTGCTGATTCGGCTCTTATGAATCCGAATTCTAGAATCCTTGCTTTAAAAGCCCAACTTCAAGGGACAACTCAGGATCACCTGCAAATATTTAATATTGAGATGAAAACAAAGATGAAATCTTATCAGATGCCTGAGCAGGTAGTCTTTTGGAAGTGGATTACCCCGAAGATGTTGGGCCTCGTGACACAGACCTCAGTATACCACTGGTCAATAGAAGGTGACACTGAGCCCGTCAAGATGTTTGAGAGAACAGCAAATTTAACAAACAACCAAATCATTAATTACCGATGTGACCCTACAGAAAAATGGTTGGTCTTGATTGGTATTGCTCCTGGTTCCCCTGAGAAGCCACAGTTGGTCAAAGGGAACATGCAACTTTTCTCTGTGGACCAGCAGCGTAGTCAAGCTCTTGAAGCACATGCTGCGTCATTTGCCCAATTTAAACAGGTTCCTGGGAATGAAAATCCATCTGTCTTGATTTCATTTGCTACAAAGTCGTTCAATGCTGGTCAATTAGCATCCAAGTTGCATGTTATTGAGCTGGGTGCACAGCCAGGGAAACCATCGTTCACAAAGAAACAGGCGGATCTTTTCTTTCCCCCGGATTTTGCTGATGACTTTCCTGTTGCAATGCAGATATCCCACAAATTCAATTTGATTTACGTGATCACCAAGCTTGGACTATTGTTTGTTTATGACTTGGAGACAGCTGCAGCAGTATATAGGAATAGAATTAGTCCAGATCCAATATTTTTGACTGCAGAAGCTTCATCAGTTGGAGGCTTTTATGCCATCAACAGGAGAGGGCAAGTGTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGTCAATTAAACAACTTGGAGCTTGCGGTTAACCTTGCCAAAAGAGGAAATCTTCCTGGCGCTGAGAAGCTGGTTGTGGAGCGTTTCCATGAACTGTTTGCCCAGACAAAGTATAAGGAAGCAGCTGAGCTTGCTGCTGAATCTCCACAAGGAATCCTCCGTACACCAGAGACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCTCTGTTGCAGTATTTTGGGACTCTTTTAACAAAAGGAAAGCTGAATGCCTTTGAATCATTGGAATTGTCACGACTTGTTGTGAACCAGAACAAGAAAAATCTGTTGGAGAATTGGTTGGCAGAGGACAAACTAGAATGCAGTGAGGAGCTTGGAGATCTTGTTAAGACTGTGGACAATGATCTTGCTTTAAAAATATATATCAAAGCCAGAGCTACTCCTAAAGTCGTTGCTGCCTTTGCTGAGAGAGGGGAGTTTGATAAAATCCTTATCTATTGTAAGCAGGTCGGCTACACACCTGACTACCTGTTCCTCTTGCAAACAATTCTCCGGACAGACCCTCAGGGTGCTGTTAACTTTGCATTAATGATGTCTCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGACCTGTTTCTTCAGAGGAATCTGATCCGTGAGGCAACAGCTTTTCTCTTGGATGTGTTGAAGCCAAATCTTCCAGAACATGGGTACCTTCAGACAAAGGTGCTGGAGATAAATCTAGTAACTTTCCCAAATGTAGCGGATGCAATTTTGGCAAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTATGTGAAAAAGCTGGTCTTTACATACGAGCTTTGCAACATTACACCGAGTTGCCAGATATTAAGCGTGTAATTGTGAATACACATGCTATTGAGCCACAGGCGCTTGTTGAGTTTTTTGGAACTCTGTCGAAAGAATGGGCATTAGAGTGCATGAAAGATCTTTTGATGGTCAATCTTAGAGGAAACCTGCAGATAATTGTGCAGGTTGCAAAAGAGTACTGTGAACAAATGGGTATTGATTCCTGCATAAAGATTTTTGAGCAGTTCAGGTCATATGAAGGACTATACTTTTTCCTGGGATCATATTTAAGCTCCAGTGAGGATCCTGACATTCACTTCAAGTACATAGAGGCTGCAGCGAAGACTGGACAAATCAAAGAGGTGGAGCGTGTGACTAGAGAATCAAATTTCTATGATCCTGAGAAAACAAAGAACTTTCTAATGGAAGCCAAGCTTCCTGATGCACGTCCTTTAATAAATGTTTGTGATCGTTTTGGATTTGTTCCTGATTTAACACATTATCTATACACAAACAACATGCTCCGTTACATTGAAGGATATGTTCAGAAGGTGAACCCAGGAAATGCTCCTTTAGTTGTTGGACAGCTGCTTGATGACGAGTGTCCAGAAGATTTTATCAAAGGCTTGATCCTTTCAGTTCGTTCTTTACTTCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGGCTTAGATTGCTTACCCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAGGATGTGCATGTCCACAATGCTCTGGGTAAAATTATCATTGACAGTAACAACAATCCAGAGCATTTTCTAACTACCAATCCGTATTATGATTCTCGCGTTGTGGGCAAATATTGTGAGAAACGTGATCCTACCTTAGCTGTTGTGGCTTACCGGAGAGGACAATGTGATGATGAACTTATCAATGTCACAAATAAAAATTCCTTGTTCAAACTACAAGCCAGATATGTGGTTGAGAGGATGGAACCTGATCTTTGGGAGAAAGTTCTTAACCCTGACAATGCCTATAGAAGGCAACTTATTGATCAGGTTGTGTCCACTGCTTTGCCTGAAAGCAAGAGTCCTGAACAAGTTTCTGCAGCTGTTAAGGCTTTCATGACAGCTGATTTGCCTCATGAGTTGATTGAACTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTCAGCGGAAACTTCAACTTGCAAAATCTTCTTATTTTGACAGCCATAAAGGCTGATCCGTCCAGAGTCATGGATTACATAAATAGACTGGATAACTTTGATGGGCCTGCAGTTGGAGAAGTGGCTGTAGAAGCTCAGTTGTACGAGGAAGCCTTTGCGATATTTAAGAAGTTCAACTTGAATGTCCAAGCAGTCAATGTCTTGTTAGATAATATTCGTAGCATTGATAGAGCTGTGGAGTTTGCCTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAAGTTGCTAAGGCTCAACTCAGGGAAGGGCTTGTAAGTGATGCAATTGAGTCATTTATCCGAGCTGATGATGCCACACAATTCCTGGATGTTATTCGTGCTGCTGAAGATGGCAATGTTTACCATGACTTGGTGAGGTACTTGCTTATGGTAAGGCAAAAGGTGAAAGAACCCAAGGTAGACAGTGAGCTCATTTATGCATATGCAAAGATTGATAGGCTCAGTGATATTGAGGAGTTCATCCTCATGCCGAATGTGGCTAATCTTCAAAATGTTGGTGACCGATTATATGATGAAGCCTTATATGAGGCTGCAAAAATCATATTTGCTTTTATATCTAACTGGGCCAAGTTGGCTGTCACGCTGGTGAAGTTGAAACAATTCCAAGGTGCTGTTGATGCAGCAAGGAAAGCAAACAGTTCAAAGACATGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCTGAGGAGTTTCGTTTGGCCCAAATATGTGGGCTTAACATTATTATTCAGGTGGATGACTTGGAGGAAGTAAGTGACTATTACCAAAATAGGGGTTACTTCAATGAGTTAATCTCTCTCATGGAGAGTGGCTTAGGTTTAGAACGGGCACATATGGGCATCTTCACTGAGTTGGGAGTTCTATATGCTAGATACCGTCCCGAAAAGCTTATGGAACACATCAAGCTCTTCTCAACACGCCTCAATATTCCAAAACTCATCAGAGCTTGTGACGAACAACAGCACTGGATGGAATTGACCTATTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACTACAATCATGAACCATTCTCCTGAAGCATGGGATCACATGCAGTTCAAAGACGTCATTGTCAAAGTTGCTAATGTTGAATTATATTATAAGGCTGTTCACTTCTATTTGCAAGAGCATCCTGATCTCATTAATGATGTCCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATAATGCGAAAGGCTGGTCACCTGCGTCTTGTGAAGCCATACATGGTTGCAGTTCAGAGCAACAATGTATCTGCTGTTAATGAAGCGTTGAATGAGATATATGTTGAGGAGGAAGACTATGATAGATTGCGTGAATCAATTGATTTGCATGATAACTTTGATCAAATAGGCCTTGCACAGAAGATTGAGAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAAGCCGGTGGAAGCAGTCCATTGCCTTGTCAAAGAAGGATAACCTTTACAAAGATGCGATGGAGACAGCCTCACAATCTGGTGACCGTGAACTTGCTGAGGAGTTGCTTGTATATTTCATTGAACAGGGAAAGAAGGAATGCTTTGCCTCATGCCTCTTTGTTTGTTATGATTTAATCCGGGCAGACATAGCTCTTGAACTTGCTTGGATGAACAATATGATTGATTTCGCCTTCCCATATCTCTTACAGTTCATACGTGAATACACTGGTAAAGTTGATGAATTGGTGAAGGACAAACTTGAAGCGCAAAATGAAGTGAAGGCTAAAGAGAAGGAGGAAAAGGAAGTAATCGCGCAACAGAACATGTATGCTCAGTTGTTACCTCTGGCGTTGCCTGCACCACCAATGCCAGGAATGGGAGGAGGTTTTGCTCCTCCCCCTCCCCCTCCTATGGGTGGAATGGGGATGCCTCCGATGCCACCTTTTGGCATGCCACCTATGGGCAGCAGCTACTGA 5115 0.427 MAAANAPIAMREALTLPSVGINPQFITFTHVTMESEKYICVRETSPQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKTKMKSYQMPEQVVFWKWITPKMLGLVTQTSVYHWSIEGDTEPVKMFERTANLTNNQIINYRCDPTEKWLVLIGIAPGSPEKPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKQVPGNENPSVLISFATKSFNAGQLASKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKFNLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTAEASSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPETVAKFQSVPVQAGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERGEFDKILIYCKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYIRALQHYTELPDIKRVIVNTHAIEPQALVEFFGTLSKEWALECMKDLLMVNLRGNLQIIVQVAKEYCEQMGIDSCIKIFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMEPDLWEKVLNPDNAYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDGNVYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEALYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSDYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWMELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVIVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKASRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRADIALELAWMNNMIDFAFPYLLQFIREYTGKVDELVKDKLEAQNEVKAKEKEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPPPMGGMGMPPMPPFGMPPMGSSY 1704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1813 1704 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 701 843 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 SUPERFAMILY ARM repeat 346 501 IPR016024 -
Prci2g1813 1704 Pfam Clathrin, heavy-chain linker 345 368 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Prci2g1813 1704 SUPERFAMILY Clathrin heavy-chain terminal domain 5 344 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Prci2g1813 1704 PIRSF CHC 3 1684 IPR016341 GO:0016192|GO:0032051|GO:0071439
Prci2g1813 1704 FunFam Clathrin heavy chain 460 788 - -
Prci2g1813 1704 Pfam Clathrin propeller repeat 156 197 IPR022365 -
Prci2g1813 1704 Pfam Clathrin propeller repeat 20 56 IPR022365 -
Prci2g1813 1704 FunFam Clathrin heavy chain 903 1054 - -
Prci2g1813 1704 SUPERFAMILY ARM repeat 1197 1532 IPR016024 -
Prci2g1813 1704 FunFam Clathrin heavy chain 1543 1639 - -
Prci2g1813 1704 Gene3D - 1543 1639 - -
Prci2g1813 1704 Pfam Region in Clathrin and VPS 1148 1282 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 Pfam Region in Clathrin and VPS 1441 1580 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 Pfam Region in Clathrin and VPS 558 691 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 Pfam Region in Clathrin and VPS 851 984 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 Pfam Region in Clathrin and VPS 994 1132 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 Pfam Region in Clathrin and VPS 1293 1432 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 Pfam Region in Clathrin and VPS 702 841 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 PANTHER CLATHRIN HEAVY CHAIN RELATED 4 1499 - -
Prci2g1813 1704 SUPERFAMILY ARM repeat 1053 1196 IPR016024 -
Prci2g1813 1704 Pfam Clathrin-H-link 370 435 - -
Prci2g1813 1704 Coils Coil 1618 1653 - -
Prci2g1813 1704 SMART CLH_2 1289 1435 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 SMART CLH_2 1438 1597 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 SMART CLH_2 552 694 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 SMART CLH_2 1143 1284 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 SMART CLH_2 848 987 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 SMART CLH_2 994 1139 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 SMART CLH_2 701 843 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 Gene3D Tetratricopeptide repeat domain 903 1057 IPR011990 GO:0005515
Prci2g1813 1704 Gene3D Tetratricopeptide repeat domain 458 790 IPR011990 GO:0005515
Prci2g1813 1704 Gene3D Tetratricopeptide repeat domain 1058 1197 IPR011990 GO:0005515
Prci2g1813 1704 Gene3D Tetratricopeptide repeat domain 1198 1537 IPR011990 GO:0005515
Prci2g1813 1704 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1438 1581 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1289 1435 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 FunFam Clathrin heavy chain 1198 1537 - -
Prci2g1813 1704 SUPERFAMILY ARM repeat 458 794 IPR016024 -
Prci2g1813 1704 Gene3D - 1 378 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Prci2g1813 1704 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 994 1139 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 FunFam Clathrin heavy chain 1 378 - -
Prci2g1813 1704 FunFam Clathrin heavy chain 1055 1197 - -
Prci2g1813 1704 SUPERFAMILY ARM repeat 902 1067 IPR016024 -
Prci2g1813 1704 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 848 987 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1143 1284 IPR000547 GO:0006886|GO:0016192
Prci2g1813 1704 Coils Coil 1478 1498 - -
Prci2g1813 1704 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 552 698 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1813 Prci-Chr2 13286562 13299384 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1813 K04646 - gmx:547986 3151.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1813 2 13286562 13299384 Prci2g1813 2 13286562 13299384 CCT
Prci2g1813 2 13286562 13299384 Prci2g1813 2 13286562 13299384 ECH