Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1780 ATGGAGGCCCTCAAGACCATTCATAGCTCATCCATTTTTTTACTCATTCTGTTCTTTCTAGCTTCCGCATTGTCTTGTGTAAATGCCAGAGTTCACAAGCACCAGTTTGTTGTTGAAGCGACTAAAGTGAAGAGACTGTGCAAAACCCACAACACCATCACAGTGAACGGCCAATTCCCTGGCCCAACTTTGGAGGTGAATAACGGAGACACTTTAGTCGTCAAAGTCACCAACAAAGCTCGTTACAACGTCACCATTCACTGGCATGGGGTTCGGCAAATGAGAACCGGATGGGCAGACGGACCAGAGTTTGTGACACAGTGCCCTATTCGTCCTGGAGGAAGCTACACTTACCGTTTCACAATTCAAGGTCAAGAAGGCACACTTTGGTGGCACGCTCACAGCTCCTGGCTTAGAGCTACTGTTTATGGAGCTCTCATCATTCGTCCCAGGGAGAGAGAGCCCTATCCTTTCCCTAAACCAAAGCACGAGACTCCCATTCTTCTCGGGGAGTGGTGGGACATAAACCCCATTGATGTTCTGAGAGAGGCCGCTCGAACAGGAGCTGCTCCTAACGTGTCTGATGCTTACACTATCAATGGTCAACCTGGCGATCTTTACAAGTGTTCTAGCCAAGAGACCACCGTTGTTCCAATAGACTCCGGCGAGACCCATCTCCTCCGGGTCATCAACGCTGCACTCAATCAACCTCTTTTCTTCACCATCGCCAACCACAAGCTGACGGTGGTCGGTGCCGATGCCTCCTACGTCAAGCCATTCACCACCAACGTTCTCATGCTAGGACCTGGTCAAACCACCGACGTCCTCATCACCGGCGACCAACCCTCTTCCCGCTACTACATGGCGGCGCGGGCTTACCAATCCGCCCAGAACGCAGCCTTCGACAACACAACCACCACCGCCATTCTCCAGTACAAACCCGCAAAGCATCTCTCGAAAGGAGCCTCCGGCGTCAAACCGGTGATGCCCCCACTGCCCGCCTACAACGACACCAACACCGTCACCGCCTTCAGCAGGAAATTCCGAAGCCCAAGAAAAGCCGAAGTGCCCACAGAAATCGACGAGAGCCTCTTCTTCACCGTGGGCCTTGGTCTCAACAAGTGCCCGCCCAATTTCAGAAAGAGACGGTGCCAGGGGCCCAATGGGACTCGATTCACTGCGAGCATGAACAACGTATCTTTCGCGCTCCCCAGAAACATCTCCATCCTCCAGGCCCACCAGCTGGGAGTCCCGGGGGTGTTCACCACCGATTTCCCGGCCAGCCCTCCGGTGAAGTTTGATTACACCGGTAATGTCAGCCGTTCACTCTGGCAACCTGTCCCTGGAACCAAGGTGTACAAGCTCAAGTACGGATCAAGGGTTCAGGTTGTTCTGCAGGACACTAACATCGTGACCCCCGAGAACCACCCGATTCATCTTCATGGATACGATTTCTACATCGTAGCAGAGGGATTTGGAAACTTCAACCCCAAGAAAGACACCGCGAAATTCAACCTCGTTGATCCGCCTCTCAGGAACACCGTGGCTGTTCCCGTGAACGGATGGGCAGCTATCCGATTCGTTGCAGATAATCCAGGTGCTTGGATCATGCATTGCCATTTGGATGTTCATATAAACTGGGGTTTGGCCATGGTGTTCTTGGTGGAGAATGGAGTTGGAAAATTGCAATCCATAGAGCCGCCTCCCGCAGATCTGCCTCTCTGTTAG 1728 0.5278 MEALKTIHSSSIFLLILFFLASALSCVNARVHKHQFVVEATKVKRLCKTHNTITVNGQFPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPEFVTQCPIRPGGSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIRPREREPYPFPKPKHETPILLGEWWDINPIDVLREAARTGAAPNVSDAYTINGQPGDLYKCSSQETTVVPIDSGETHLLRVINAALNQPLFFTIANHKLTVVGADASYVKPFTTNVLMLGPGQTTDVLITGDQPSSRYYMAARAYQSAQNAAFDNTTTTAILQYKPAKHLSKGASGVKPVMPPLPAYNDTNTVTAFSRKFRSPRKAEVPTEIDESLFFTVGLGLNKCPPNFRKRRCQGPNGTRFTASMNNVSFALPRNISILQAHQLGVPGVFTTDFPASPPVKFDYTGNVSRSLWQPVPGTKVYKLKYGSRVQVVLQDTNIVTPENHPIHLHGYDFYIVAEGFGNFNPKKDTAKFNLVDPPLRNTVAVPVNGWAAIRFVADNPGAWIMHCHLDVHINWGLAMVFLVENGVGKLQSIEPPPADLPLC 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1780 575 NCBIfam laccase 29 575 IPR017761 GO:0046274|GO:0048046|GO:0052716
Prci2g1780 575 Gene3D - 162 353 IPR008972 -
Prci2g1780 575 Gene3D - 32 161 IPR008972 -
Prci2g1780 575 ProSitePatterns Multicopper oxidases signature 1. 533 553 IPR033138 -
Prci2g1780 575 Pfam Multicopper oxidase 164 314 IPR001117 -
Prci2g1780 575 Pfam Multicopper oxidase 38 152 IPR011707 GO:0005507
Prci2g1780 575 FunFam Laccase 20 150 - -
Prci2g1780 575 FunFam Laccase 162 354 - -
Prci2g1780 575 Pfam Multicopper oxidase 425 557 IPR011706 GO:0005507|GO:0016491
Prci2g1780 575 Gene3D - 380 575 IPR008972 -
Prci2g1780 575 CDD CuRO_1_LCC_plant 34 150 IPR034288 GO:0005507
Prci2g1780 575 CDD CuRO_3_LCC_plant 420 558 IPR034289 GO:0005507
Prci2g1780 575 SUPERFAMILY Cupredoxins 27 177 IPR008972 -
Prci2g1780 575 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Prci2g1780 575 SUPERFAMILY Cupredoxins 158 351 IPR008972 -
Prci2g1780 575 SUPERFAMILY Cupredoxins 356 575 IPR008972 -
Prci2g1780 575 CDD CuRO_2_LCC_plant 166 312 IPR034285 -
Prci2g1780 575 PANTHER MULTI-COPPER OXIDASE 33 560 IPR045087 -
Prci2g1780 575 ProSitePatterns Multicopper oxidases signature 2. 538 549 IPR002355 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1780 Prci-Chr2 13094718 13097547 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1780 K05909 - gmx:547704 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1780 2 13094718 13097547 Prci2g1780 2 13094718 13097547 CCT