Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g1055 ATGCTCGAGCGTGAAAGTGGGTGCTACTTTGACGTGAAACATTTTGAGGACATGGTGCTTGCTGGGAAATTTGACGACGCTGAGACTTATCTATCCTGTTTCACAACTGTTGATGACAATAGGTACTCCACCAAAATATATTTTGAATTGAGGAAACAGAAATTCCTCGAGGCATTGGACAGAAATGATCGTTCCAAGGCTCTAGATATCCTGATAAAGGATCTCAAAGTTTTTTCCCCAGGACACGAAGAACTTCTCGAAGAAATGACTCTGCTGTTGACGATAAATAATATAAGGGAGCATGAATCACTTTCAAACTACCAAGACACAAATTCTGTGAGGAAGATTGTTGTAGAGGATCTTAAAACAATCATTGAAGAAAATCCACTGTTTAATGGAAAGCTCAAGTTTCCTGCCATAAAATCTCAGAGCTTAAATTGGCAGCATATGCTTTGCAAACGTCTTATTCCTGAGCCTGTCATGCAAACCCTCTTTGTGGACCATATTTTTAAGCTGTGCTCAAATCCTGTTAACAGTGATGACTGCGGCCCATCTACTGTAACAGATTCCTTACTCTTCCCTGCTGCTAAAGAAAGCTCAGAAACGTCTGTGAAGGTTCTTGGGGATCCAAATCGAATATTCAAGGGAAAATCCTGCCAAGCTTTGGATGAGGTAACATCATCGGCCACAGAAAGTTGCCTGCCCCAGAAGGTTGTTCTGACACTGAATGATAATTCGCCTCCTACTAGCATGGATTTTCATCCTACTTGGCATGCTATTCTTCTAGTTGGAACTGAAGTTGGCAATATAGGAATTTGGGATGTTACCTCTGGTGAGAAGTTGCTTTTCGTAAATTTTGAGGTTTGGGACATTGGAGCATGTTCAACCAATTTCAAAGAAGCCATAGAAAAAGATTTGTGGATCTCTGTTACCAAAGTCATTTGGAGCTTTGATGGTTCATTTTTTGGGGTTGCATTTTCAAAACATCTAGTTCAGTTATATTCCTATAATGGTGGGGGAGACATTTGCCAGCATTCAGAAATTGAAGCTCATGATGGCAGTGTCAATGATATAGCCTTTTCTTTTGTTCGTGAGCAATTATTGGTCATAACATGTGGTGATGACAAGGCAGTAAAGGTGTGGGATGTGGATACCAGTGAGAAATGTTATACTTTTGGTGCCCATAGTGCTCCAGTTTGTTCCATCTGTCCTCATGTGAAGGAAAATGTTCATTTTATATTTTCAACTTCAATTGATGGTAAGATTAAGGCATGGTTATATGATACTATGGGCCCGAGAGTTGATTATGATGCCCCTGGTTGTGGATACACTAAATTGGCTTACAGTACTAATGACCAAAGGCTATTTTCATGTGGTGTTGGTAAGGATGGAGAGCCATTTCTTGTGGAATGGGATGAAAGTGAAGGGTACATAAAAAGAGTCTACAAGGGACTTAAGGCTCCATGCTTTTCCAAAATCCAGTTTGACACGACAAGGAACCAATTTTTGGTTGCTGCTGATGATCGTATGATTAAATATTGGGATATGGACAATGTACAGCTATTGGCAAGCATTGATGCCAATGGAGGCTTGTTAGAATATCCTTGCATTCGCTTCAACAAAGAGGGCAGATTGCTGGCTGTTGCTGCAAGAGAAAATAAAATCAAAATCTTAGAGTTTGATTATGACGTTTTACTGATGCAAAACGAAGCTTGTTCTATTCATCCCCCTACTGTTCTCTCTGGAACCACAGCAGGGAATGAGAACACGGAAGTCTTGGAAGGCATGGACACTAATTTAGCCGAAGAAGATGATAGCTCATCAAAGTTTTGGAATATCTTCAAAATTTCCGAACCATCTCAGTGCCAGTTCTTGCAGCTCCCTGTTCACCCGAGAGTCAATAAGATTGTCAGACTGATTTACACCAACGCGGGAAATGCCATCCTAGCATTGGCATCAGATGGTATAAATATACTTTGGAAATGGCCAGAGAATGAGCAAGAAACGTCCAAGGTTTCCCCTCAATTATGGCAACCAAGGAATGGCTTGCAGTGTATGAGCAATAATCTTGCAAACATCAAACCCGAAGAATCAATAGGCTGTTTTGCTATATCAAAAAATGATTCATATCTCATTTCAACATCTGGCGGTGTAATCTCCTTGTTCAACATGTTGTCATTCAAGACTATGACAACTTTCATGTCTCCACCACCTATGGCAACATCTATTTCCTTCTGCCCTCGAGATAATAATGTACTTGCTGTAGGCTTTGATGATTCTAGCATCTTTATATATAATGTCCGTACAAGCAAGATTATAAGAAAGCTGAAGGGTCACACCACAAGAGTTACTTCCCTTGCCTTCTCAAACACTTTAAATGTTCTTGTTTCTGCTGAGGTTAATAGTCAGATTTTCTTATGGAATATTGAGGGGTGGGAAAAACTGAAAGGAAGGTACTTGCAGATACCTGCTCAGAGGAAGCCAGAAGTTCCATCTGATACTCATATTCAGTTTCACCCAGAACAGATAAACTTCCTCGCTGTACAAAATAGTCATCTTGCAATTTATGAAGCACAGGAATTAACTTGTGTCATACAGTGGGTTCCAGTACTTCCTGTGGTTATTTCCCAGGCAGTTTTCTCATCTGATGGCATGGACATATATGCCGGTTTTGCGGATGGGACTATCATAATATTTGATGCTTTAAATCTTCAACCTCTTTGCAGGATAAACCCCACTTCTTACCTTTCCCCCGCTTCAAGTGAGAGCATCTGCCTACTTGCTGTAGCTGCAAATCCAGTGAAGGCAGGCCAGTTTACTGTGGGGCTCTCAGATGGTAATGTCTATGTGATGGAGCCTCCTGAGCCAGGACTTAAATGGTCCACACTTTCACGCGATGACAAGCAGGCAGCAGAAGCCAGTGGCATGGGAGTCGCTTAG 2940 0.4119 MLERESGCYFDVKHFEDMVLAGKFDDAETYLSCFTTVDDNRYSTKIYFELRKQKFLEALDRNDRSKALDILIKDLKVFSPGHEELLEEMTLLLTINNIREHESLSNYQDTNSVRKIVVEDLKTIIEENPLFNGKLKFPAIKSQSLNWQHMLCKRLIPEPVMQTLFVDHIFKLCSNPVNSDDCGPSTVTDSLLFPAAKESSETSVKVLGDPNRIFKGKSCQALDEVTSSATESCLPQKVVLTLNDNSPPTSMDFHPTWHAILLVGTEVGNIGIWDVTSGEKLLFVNFEVWDIGACSTNFKEAIEKDLWISVTKVIWSFDGSFFGVAFSKHLVQLYSYNGGGDICQHSEIEAHDGSVNDIAFSFVREQLLVITCGDDKAVKVWDVDTSEKCYTFGAHSAPVCSICPHVKENVHFIFSTSIDGKIKAWLYDTMGPRVDYDAPGCGYTKLAYSTNDQRLFSCGVGKDGEPFLVEWDESEGYIKRVYKGLKAPCFSKIQFDTTRNQFLVAADDRMIKYWDMDNVQLLASIDANGGLLEYPCIRFNKEGRLLAVAARENKIKILEFDYDVLLMQNEACSIHPPTVLSGTTAGNENTEVLEGMDTNLAEEDDSSSKFWNIFKISEPSQCQFLQLPVHPRVNKIVRLIYTNAGNAILALASDGINILWKWPENEQETSKVSPQLWQPRNGLQCMSNNLANIKPEESIGCFAISKNDSYLISTSGGVISLFNMLSFKTMTTFMSPPPMATSISFCPRDNNVLAVGFDDSSIFIYNVRTSKIIRKLKGHTTRVTSLAFSNTLNVLVSAEVNSQIFLWNIEGWEKLKGRYLQIPAQRKPEVPSDTHIQFHPEQINFLAVQNSHLAIYEAQELTCVIQWVPVLPVVISQAVFSSDGMDIYAGFADGTIIIFDALNLQPLCRINPTSYLSPASSESICLLAVAANPVKAGQFTVGLSDGNVYVMEPPEPGLKWSTLSRDDKQAAEASGMGVA 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g1055 979 SMART ctlh 8 66 IPR006595 -
Prci2g1055 979 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 776 810 - -
Prci2g1055 979 Pfam WD domain, G-beta repeat 343 382 IPR001680 GO:0005515
Prci2g1055 979 Pfam WD domain, G-beta repeat 772 808 IPR001680 GO:0005515
Prci2g1055 979 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 9 66 IPR006595 -
Prci2g1055 979 ProSitePatterns Trp-Asp (WD) repeats signature. 795 809 IPR019775 -
Prci2g1055 979 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 391 IPR001680 GO:0005515
Prci2g1055 979 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 260 814 IPR011047 -
Prci2g1055 979 SMART WD40_4 235 274 IPR001680 GO:0005515
Prci2g1055 979 SMART WD40_4 686 723 IPR001680 GO:0005515
Prci2g1055 979 SMART WD40_4 769 808 IPR001680 GO:0005515
Prci2g1055 979 SMART WD40_4 518 559 IPR001680 GO:0005515
Prci2g1055 979 SMART WD40_4 385 426 IPR001680 GO:0005515
Prci2g1055 979 SMART WD40_4 475 515 IPR001680 GO:0005515
Prci2g1055 979 SMART WD40_4 726 766 IPR001680 GO:0005515
Prci2g1055 979 SMART WD40_4 341 382 IPR001680 GO:0005515
Prci2g1055 979 SMART WD40_4 860 900 IPR001680 GO:0005515
Prci2g1055 979 ProSitePatterns Trp-Asp (WD) repeats signature. 369 383 IPR019775 -
Prci2g1055 979 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 387 - -
Prci2g1055 979 SUPERFAMILY Nucleoporin domain 824 958 - -
Prci2g1055 979 Gene3D - 222 465 IPR015943 GO:0005515
Prci2g1055 979 Gene3D - 823 969 IPR015943 GO:0005515
Prci2g1055 979 Gene3D - 597 819 IPR015943 GO:0005515
Prci2g1055 979 Gene3D - 468 568 IPR015943 GO:0005515
Prci2g1055 979 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 2 969 IPR027728 GO:0006355
Prci2g1055 979 ProSiteProfiles Trp-Asp (WD) repeats profile. 776 810 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g1055 Prci-Chr2 7713772 7720958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g1055 350 561 Miscellaneous Gene Families AT5G08390 24.775 1.20e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g1055 - - pcin:129299493 1981.45