Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0966 ATGCTTTTCCATAACCCTCGTCATTTGGTCTTCCTAGTTCGTCCTCTGTTGCAAAGGTCAAAGCTTCTTCCATTCCTTAGAGTTCGAACACAACGCTTCTTTTCCCATTCGGCACAATCATGGCTATCTATGCCGGGTAACTCTATCATCGATTGGCCGTCACTACCAATCCAAGAACGCAACCCTGACCCGAACCCGAAATCGAATGCAGGCTCTAACTTCTCGCGGGATGATTTTTCCACCATTGCCACTCTCTTTGCCGATCCTTCTATCTCTCCGGGTCCAGCTCTGGATAATGCACTTGATCGGGCAGGAATTGAGCCGGATCCGACTCTGCTGCAAGCGGTAATCAATCATTTCGATTCTTCCCCCAAGTTACTCCACACGCTGTTTCTTTGGGCTCAGAAGCGACCAGAGTTCCAGCCCAGTGTGACGCTTTTCAACTCTATGATCAACGTTCTTGCCAAATCGAGGGAGTTTGATTCCGCTTGGATTTTGCTTCTTGAACGGATTGATAGCCACGAGGAAGCCATCTTCGTTTCCGGAGATACCTTTGCTATAATGATCAGACGTTACGCACTTGCAGGCATGTCACAATCTGCAATTCGAACATTTGAGTATGCTAGAAATTTAAAGCCAATTCTGGATTCGAACTCAGAAATGAGATTGTTTGAGATATTGTTGGATTCCCTTTGTAAAGAAGGGTCTGTCAGAGCAGCTTCAGAGTATTTCCTACGGAGGAAGAAGATGGACCCATTATGGGTCCCATCAGTTCGGATATATAATATTATGCTAAATGGATGGTTTAGATCAAGGAAACTCAAACATGCAGAGAGATTTTGGGCAGAGATGAAGAAGGAGAATGTAAGACCAAGTGTGGTGACTTATGGCACCCTTGTGGAAGGATATTGCCGGATGCGTCGTCTTGAAAAGGCCATTGAATTGGTTAGTTCTATGACCAAACAAGGAATTGAACCAAATGCAATTGTTTATAATCCAATAATCGATGCATTAGCAGAGGCTGGGAGATTCAGAGAGGCTTTGGGGATGCTGGAGCGCTTTCTTGTTTTAGAAACTGGCCCAACTAGCTCAACTTACAATTCTTTGGTGAAGGGATTTTGCAAGGCAGGAGATCTTGTTGGTGCCAGTAAGATTCTTAAGATGATGATAAGTAGGGATTTCATGCCCAGTCCCACCACCTATAACTACTTCTTTAGGTACTTCTCAAGATGTGGGAAAGTTGATGAGGGTATGAACCTTTATACCAAGATGATTGAATCTGGTTATACCCCTGATCGGCTTACTTATCATCTTTTACTGAAGATGTTATGTGAAGAGGGGAAGCTGAACTTAGCAGTTCAAGTCAGTAAGGAAATGAGGCACAAGGGATATGACATGGACCTCGCCACATGTACTATGTTGGTTCATTTGCTTTGCAAAATGCATAGGTTGGAAGAGGCTTTTGCAGAGTTTGAGAACATGATACGGAGGGGTATAGTTCCACAGTATCTCACATTTCAGAGAATGAACAATGCATTAAAGAAGCGAGGGATGATTGAAATGGCACGGAAACTATGCAGCTTGATGTCTTCTGTCCCTCATTCTACTAATTTGCCAAACTCATATGTTGAAGACATAGATGAAGCACATGCCCGGAGACAATCTATAATGCAGAAAGCCAAAGCATTTTCTGATATGCTGAAAAACATCAAGGACCCCAGAGAACTTGCCCAATGTGGAAGCTCATCAGAAAATGCTGTCTGCAGCGCTGAATGTTTGATGGATAATATTAAGAAGAGGATAAAGAAGCCATGA 1815 0.4347 MLFHNPRHLVFLVRPLLQRSKLLPFLRVRTQRFFSHSAQSWLSMPGNSIIDWPSLPIQERNPDPNPKSNAGSNFSRDDFSTIATLFADPSISPGPALDNALDRAGIEPDPTLLQAVINHFDSSPKLLHTLFLWAQKRPEFQPSVTLFNSMINVLAKSREFDSAWILLLERIDSHEEAIFVSGDTFAIMIRRYALAGMSQSAIRTFEYARNLKPILDSNSEMRLFEILLDSLCKEGSVRAASEYFLRRKKMDPLWVPSVRIYNIMLNGWFRSRKLKHAERFWAEMKKENVRPSVVTYGTLVEGYCRMRRLEKAIELVSSMTKQGIEPNAIVYNPIIDALAEAGRFREALGMLERFLVLETGPTSSTYNSLVKGFCKAGDLVGASKILKMMISRDFMPSPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEGKLNLAVQVSKEMRHKGYDMDLATCTMLVHLLCKMHRLEEAFAEFENMIRRGIVPQYLTFQRMNNALKKRGMIEMARKLCSLMSSVPHSTNLPNSYVEDIDEAHARRQSIMQKAKAFSDMLKNIKDPRELAQCGSSSENAVCSAECLMDNIKKRIKKP 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0966 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Prci2g0966 604 Pfam Pentatricopeptide repeat domain 455 507 IPR002885 -
Prci2g0966 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Prci2g0966 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Prci2g0966 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Prci2g0966 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 259 532 - -
Prci2g0966 604 Gene3D Tetratricopeptide repeat domain 110 247 IPR011990 GO:0005515
Prci2g0966 604 Gene3D Tetratricopeptide repeat domain 391 461 IPR011990 GO:0005515
Prci2g0966 604 Gene3D Tetratricopeptide repeat domain 248 319 IPR011990 GO:0005515
Prci2g0966 604 Gene3D Tetratricopeptide repeat domain 320 390 IPR011990 GO:0005515
Prci2g0966 604 Gene3D Tetratricopeptide repeat domain 462 532 IPR011990 GO:0005515
Prci2g0966 604 Pfam PPR repeat 330 353 IPR002885 -
Prci2g0966 604 Pfam PPR repeat 147 167 IPR002885 -
Prci2g0966 604 MobiDBLite consensus disorder prediction 54 73 - -
Prci2g0966 604 SUPERFAMILY TPR-like 191 497 IPR011990 GO:0005515
Prci2g0966 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Prci2g0966 604 Pfam PPR repeat family 361 407 IPR002885 -
Prci2g0966 604 Pfam PPR repeat family 256 305 IPR002885 -
Prci2g0966 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Prci2g0966 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Prci2g0966 604 NCBIfam pentatricopeptide repeat 400 432 IPR002885 -
Prci2g0966 604 NCBIfam pentatricopeptide repeat 260 292 IPR002885 -
Prci2g0966 604 NCBIfam pentatricopeptide repeat 329 354 IPR002885 -
Prci2g0966 604 NCBIfam pentatricopeptide repeat 470 501 IPR002885 -
Prci2g0966 604 NCBIfam pentatricopeptide repeat 294 328 IPR002885 -
Prci2g0966 604 NCBIfam pentatricopeptide repeat 365 397 IPR002885 -
Prci2g0966 604 NCBIfam pentatricopeptide repeat 435 467 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0966 Prci-Chr2 7120224 7124409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0966 112 538 Miscellaneous Gene Families AT4G11690 26.606 1.59e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0966 - - pper:18792309 827.78