Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0914 ATGAGTAGGCCAACTACACGAAGTAAAAATAAAAGACAAAGACAAGTGGATGATGGTGCTAGCACTTCTGAAATATGGAGGAAAATTCATGAAAAAGGTGCGGTAACTGATGATGATATAAATCAACTTTATATGATTTGGAAGCCGATATGTTCGAGCTGCCGTGTCAATACCAGAGACAACCCTAACTGCTTTTGTGCATTGGTTCCACCTCACAATGGAGCCCGAAAATCTGGCTTATGGCAGAAGATGTCAAGTATTGTAGACAATCTTGGTCCTGACCCAACCAAGGACCTTCGGGCATCTGCTAATTCACCTGCTGGTCTGACCAATCTTGGGGCCACATGCTATGCCAATAGCATACTGCAGTGCTTATACATGAATAAATGTTTCCGGGAAGGCATATTTTCTGTGGAACCAGATCTTTTGCAGCAGCAGCCAGTGTTAAATCAACTGGTGCGGCTTTTTGTGCAGTTGCACATTAGTAAAAGGGCTTTTGTGGATTCCTTTCCATTTGTGAAAACACTGGAGTTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTTCTGACATTGCTTTTGTCTTTGCTCGAGCATTGTCTAACCCATTCTAAAGTTCCTAAAGCAAGAACTGTGGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACAACCTGCTCACAATGTGGAAGGGACTCTGAAGCATCTTCTAAAATGGAAGACTTCTATGAGCTGGAGTTAAATGTTAAGGGATTTAAAAGTTTAGATGAGAGCCTGAATGATTATCTTGCTGTGGAGGAGCTTTGTGGAGATAATCAATATTTTTGTGCATCATGTAAAACAAGAGTTGATGCTACTCGTAGCATCAAGCTGCGCACATTACCTGATGTACTTAATTTTCAACTTAAACGTTGTGTGTTCCTTCCAGAGACTACAATGAGGAAGAAAATTACTTCCACATTTTCATTTCCAGCTAAGCTTGACATGCAGCCTAGATTGTCTGAGCCATCTCAGTCTGAATTGATATATGACTTGTCAGCTGTACTGATTCACAAGGGAACTACTGTTAATAGTGGCCATTATGTGGCTCACATCAAGGATGAGAATGCTGGGCAATGGTGGGAATTTGATGATGAGCATGTCACTAAATTAGGCTGCCATCCATTTGGTGATGGATCTTCAAATTCTACAGCAAAATCTGTAAGGACTGATCCCGTTCATTCTGATGCATCTGAAGCAAGGATAGCTGACAGTAATGGAAATGGTCTGGATGCCCCTCACCCACAATCTTCTCTTGTGGAGACATATTCATCTAGTGATGCATACATGCTGATGTACAATCTTAAGCATACCAAAAATGTAGTCAAAAGGGGGGATGTGGTCAGCAGTGCTGATTCTGTTGCTGCACGAGATAGTTTTCCTCTTTTATCTTATCTTTTTGATGAGATTCAGAACCTTAATGCTTCATATGTTGATGAGTGTGCGCAGTACAATCATAAGAAAGAGTTGGAACTGAATCGAATCACTGAAAGGAGACAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCACTTGAGCAACCATTTTATTGGATTTCTAGTGACTGGCTTCGCCAGTGGGCTGACAACATTATTCCAAGTACTCTTGACAATACATCCATTCAATGCTCGCATGGGAAAGTTCCTGTATCCAAGGTTACTTCAATGAAGCGATTGTCTGATAAAGCATGGGATAGACTGTTTTTGAAGTATGGTGGGGGGCCAACACTGGGCCATAGTGATTGCTGTTGGGATTGTCTTATTGATGGAGCTCGCTCTGTGGTGTCAGCTGACACCTATAGGGACCGGAGAGAATCAATGAAACACCTTGCACGGGAAATTCTTGATGGAAACTGTCCAGATGGAAAGTATTACATATCTAGACCATGGCTGCAACAGTGGTGGAAAAGAAAAGTACTTGATGCTCCATCTGAAGCTGATGCTGGACCGACAGCATCAGTTAGTTGCCCACATGGGCAACTTTTACCTGAGCAAGCTGCTGGTGCTAAGCGGGTTCTTGTTCCTGAGAGCTTTTGGCACTTCATATATGAAGATGCTCTTTCTGTAAAACCTGATGATCCTTTGGGTTGCCCAACATTTCCTTCAGACACAATGCCCTGTTCCGAATGCAGCAATGAATTATCTGAAGTAGCATGCTTGGAGGACTCTTTAAGATTAGTGAAGCAAGTGCAGCGTCAGAATCATGAAAAACTATTACTGGCTAAAAGTATGCCACTCTTGTTGCATTGCAAATATTTCCTAGTGCCTTCTTCATGGATTTCAAAATGGAGAAGTTACATGAGTTCATCTGTCAAGAATTCAGACAAACCTGAAACTTTAGATGGGATAATCAATTCCCTTATGTGTGAAAAGCACTCCCGCCTTGTGGAAAAGCCCCCTGAACTGGTTTTCAGACGTGGTGCTATAGTCCAAAGAGAATCTTCTGCAGGTGGTTTGACTATGATATCTGAGAATGATTGGAAATGCTTTTGTGAGGAATGGGGGGGTACTGAGACAAAAGGTATATCAGCAGCGATTGAGGATATCAGTGATTCAGAGAATATTTTGACTGGATTCAGCTCAGAGACACCAACATGTGAGGATCAGTTGAATGATAAAGTGCATAATGATAGCGGGACAAGACAGCTGGTGATTAAGACTTCTCCAGAGATTTGTGAAAGTTGCATTGGAGAAAGAGAAAGCTGTGAGCTAATGCAGAAACTTAACTATAGCAATGAGAACATATCTGTGATTCTTGTAAGGGGAAAGGAAGTTCCTAGATCAATATTAGAGGCTTCAAAGGGCTCTGTTGAAGCAGATCGACGTGTCTCCAAGCGCTCCCGGAAATCTAAAAATGGTACTTCGATAAGTCTTAAAGTTTCTGCTTCAACATCGTTGTACCAGCTAAAAATGATGATATGGGAGGCCTTTGGGGTTGTAAAGGAAAACCAGATATTACAGAAAGGTGACAGGACAATTGATAATGAGGATGAATGTGCTACACTCGCTGATGTAAACATATTTGCTGGAGATCAGATTATAGTGAGGGACTCTGAGATCCATGAAAACCGAGATATTGCTGATGAGATTTGTGATGATAAAATGGAAATGCAGCGGAGTGAGGGAGGGTTTCGCGGAACACTTCTGACAGCAGACGTTTCATCCCAGGTTGTTTGA 3225 0.4198 MSRPTTRSKNKRQRQVDDGASTSEIWRKIHEKGAVTDDDINQLYMIWKPICSSCRVNTRDNPNCFCALVPPHNGARKSGLWQKMSSIVDNLGPDPTKDLRASANSPAGLTNLGATCYANSILQCLYMNKCFREGIFSVEPDLLQQQPVLNQLVRLFVQLHISKRAFVDSFPFVKTLELDNGVQQDSHEFLTLLLSLLEHCLTHSKVPKARTVVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGFKSLDESLNDYLAVEELCGDNQYFCASCKTRVDATRSIKLRTLPDVLNFQLKRCVFLPETTMRKKITSTFSFPAKLDMQPRLSEPSQSELIYDLSAVLIHKGTTVNSGHYVAHIKDENAGQWWEFDDEHVTKLGCHPFGDGSSNSTAKSVRTDPVHSDASEARIADSNGNGLDAPHPQSSLVETYSSSDAYMLMYNLKHTKNVVKRGDVVSSADSVAARDSFPLLSYLFDEIQNLNASYVDECAQYNHKKELELNRITERRQEVRSVLAEAPVQPLEQPFYWISSDWLRQWADNIIPSTLDNTSIQCSHGKVPVSKVTSMKRLSDKAWDRLFLKYGGGPTLGHSDCCWDCLIDGARSVVSADTYRDRRESMKHLAREILDGNCPDGKYYISRPWLQQWWKRKVLDAPSEADAGPTASVSCPHGQLLPEQAAGAKRVLVPESFWHFIYEDALSVKPDDPLGCPTFPSDTMPCSECSNELSEVACLEDSLRLVKQVQRQNHEKLLLAKSMPLLLHCKYFLVPSSWISKWRSYMSSSVKNSDKPETLDGIINSLMCEKHSRLVEKPPELVFRRGAIVQRESSAGGLTMISENDWKCFCEEWGGTETKGISAAIEDISDSENILTGFSSETPTCEDQLNDKVHNDSGTRQLVIKTSPEICESCIGERESCELMQKLNYSNENISVILVRGKEVPRSILEASKGSVEADRRVSKRSRKSKNGTSISLKVSASTSLYQLKMMIWEAFGVVKENQILQKGDRTIDNEDECATLADVNIFAGDQIIVRDSEIHENRDIADEICDDKMEMQRSEGGFRGTLLTADVSSQVV 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0914 1074 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Prci2g0914 1074 FunFam Ubiquitin carboxyl-terminal hydrolase 26 498 596 - -
Prci2g0914 1074 Gene3D - 739 858 IPR035927 -
Prci2g0914 1074 Gene3D - 963 1034 - -
Prci2g0914 1074 SMART dusp 525 601 IPR006615 GO:0004843
Prci2g0914 1074 FunFam ubiquitin carboxyl-terminal hydrolase 48 94 450 - -
Prci2g0914 1074 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Prci2g0914 1074 Gene3D - 498 596 IPR035927 -
Prci2g0914 1074 ProSiteProfiles DUSP domain profile. 742 862 IPR006615 GO:0004843
Prci2g0914 1074 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 72 450 - -
Prci2g0914 1074 MobiDBLite consensus disorder prediction 1 21 - -
Prci2g0914 1074 SUPERFAMILY Ubiquitin-like 966 1032 IPR029071 -
Prci2g0914 1074 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Prci2g0914 1074 SUPERFAMILY DUSP-like 507 597 IPR035927 -
Prci2g0914 1074 CDD Ubl_USP48 964 1065 IPR044743 GO:0004197|GO:0004843|GO:0016579
Prci2g0914 1074 ProSiteProfiles DUSP domain profile. 507 599 IPR006615 GO:0004843
Prci2g0914 1074 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Prci2g0914 1074 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Prci2g0914 1074 SUPERFAMILY Cysteine proteinases 105 451 IPR038765 -
Prci2g0914 1074 Gene3D Cysteine proteinases 93 450 - -
Prci2g0914 1074 ProSiteProfiles DUSP domain profile. 614 721 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0914 Prci-Chr2 6768844 6778371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0914 105 382 Miscellaneous Gene Families AT4G31670 30.333 1.44e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0914 - - gmx:100795556 1741.86