Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0875 ATGCTCGAAACTCACATTCTGTCCTACTTTGCTCCTACACAATCTAACTCAAAGCCACTTTCTTCCTTTCTTGTCACATTTTCTTCTGCTCCGACACGGCGTCGCTTGAAGACCACCGCCAATCCGCGTTTAAAGAACCTTAAGTGCTTCACTTCCCGAATCGTCCAACTCACACGCCGAAGGCAGCTTCAACAGATATTCGAAGAGATTGAAATTGCCAAGAAACGTTTTGGGAAGCTGAACACCATTGTCATGAACGCGGTCGTGGAGGCCTGTGTTCACTGCGGTGATATTGATTCAGCTCTTAGGATATTTAATGAGATGACAAAACCGGGGAGCTGTGGCGTGGATACTGTCACGTATGCCACGCTTTTAAAGGGCTTAGGCGAGATGCGGAAAGTTGATGAAGCCTTTCAATTGCTTGAATCCGTGGATAAAGGTACTGCGCCTGGAAATCCGAAGTTGTCAGCATCGTTGATCTTTGGTCTGCTAAATGCCATAATTGATGCAGGAGATTTACGTCGTGCAAATGGCCTCCTCGCTCGTTATGGTTATCTACTTCGTGAAGGTGGCAATTTCTCAGTCTCAGTATACAACTTACTCATAAAGGGGTATATCACCGCAGGTTTTCCTCAAGATGCTGTAAACTTGCACAATGAAATATTACGTCATGGAATGAAGCCTGACAGGCTCACCTACAACACTCTCATATTAGCATGCGTCAAGAGTCAAAACATGGATACTGCAATGCAATTTTTTGAAAACATGAAGGGTGAAGCACAGAGATCTACCCAAAATGATGTTTTGCCAGATATCGTGACATACACAACACTGCTCAAGGGTTTTGGGCAGGCCAAAGATCTCTCGTCAGTCCTGAAAGCAGTGCTGGAAATGAAATCATGTGCTCAATGCATCTTTGGAGAAATACTGAAGCTTGCTGGTTGGAATCCAGAGTTGAGGCCCAAGCCTCACCTTTATCTTTCCATGATGCGTGCTTTTGCTACTAGAGGAGATTACAGTGTTGTCAGAAACTTGCATAGGCGGCTTTTGCCAGATTCTGCGGGAACCATCTTGCCAGTTGCCCAAGAAGAAGCTGATCATCTTCTCATGGAAGCGGCACTGAATAGTGGTCAGGTTGATGTTGCCCTTGAAACTCTTATTAATATTGCTTCAAAGTGGAGGGGTATATCATGGACAAGTCGTGGAGGCCTGGTGACTTTGCGCATTGAGGCCACATTGGGATTCTCAAAATCCATATTCAGTCCTTACCTACTTCCTAAGGTTTCACCTGCTGAACCAGTTGAGAGATTCATGTTGCCATTTGAAGCAACTGGACCACTACAAGGCACCGTACAATTGAAGGAAGTGGTTATGCGTTTCTTTACCGACACAGTTATTCCAATAGTAGATGATTGGGGCAGCTGTATTGGGTTGGTGCACCATGAAGACTGCACTCAGGATGGCAATTTCTGCACCAGACCTTTATTTATTTGGTTATTCAATGAATTCATCGTGCAGTTGGACTCGAATGCTCCACTTTCAACAATGATGAGAAGCCCGCCTCCCACTGTTACAACTACGACGTCAGTTGGTCATGTTGTTGATATGATTTTGGACAAGGGCTACCCAATGGTTGTCATTGTAAAGTACACCAGTTCATATGGCACTGCATACAGCTCAAGGGCAGTTGGAGTTTTTACATCAGAACAATTGTATAGGCTTATCACACCTGCATTTGAGTCACTAGGGCCAAAACTTTCAATCTTTAGAAGATAA 1776 0.4454 MLETHILSYFAPTQSNSKPLSSFLVTFSSAPTRRRLKTTANPRLKNLKCFTSRIVQLTRRRQLQQIFEEIEIAKKRFGKLNTIVMNAVVEACVHCGDIDSALRIFNEMTKPGSCGVDTVTYATLLKGLGEMRKVDEAFQLLESVDKGTAPGNPKLSASLIFGLLNAIIDAGDLRRANGLLARYGYLLREGGNFSVSVYNLLIKGYITAGFPQDAVNLHNEILRHGMKPDRLTYNTLILACVKSQNMDTAMQFFENMKGEAQRSTQNDVLPDIVTYTTLLKGFGQAKDLSSVLKAVLEMKSCAQCIFGEILKLAGWNPELRPKPHLYLSMMRAFATRGDYSVVRNLHRRLLPDSAGTILPVAQEEADHLLMEAALNSGQVDVALETLINIASKWRGISWTSRGGLVTLRIEATLGFSKSIFSPYLLPKVSPAEPVERFMLPFEATGPLQGTVQLKEVVMRFFTDTVIPIVDDWGSCIGLVHHEDCTQDGNFCTRPLFIWLFNEFIVQLDSNAPLSTMMRSPPPTVTTTTSVGHVVDMILDKGYPMVVIVKYTSSYGTAYSSRAVGVFTSEQLYRLITPAFESLGPKLSIFRR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0875 591 Pfam Pentatricopeptide repeat domain 265 299 IPR002885 -
Prci2g0875 591 Gene3D - 454 583 IPR046342 -
Prci2g0875 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Prci2g0875 591 Pfam PPR repeat family 81 128 IPR002885 -
Prci2g0875 591 Pfam PPR repeat family 195 242 IPR002885 -
Prci2g0875 591 NCBIfam pentatricopeptide repeat 197 229 IPR002885 -
Prci2g0875 591 NCBIfam pentatricopeptide repeat 85 109 IPR002885 -
Prci2g0875 591 NCBIfam pentatricopeptide repeat 119 143 IPR002885 -
Prci2g0875 591 NCBIfam pentatricopeptide repeat 273 300 IPR002885 -
Prci2g0875 591 NCBIfam pentatricopeptide repeat 232 257 IPR002885 -
Prci2g0875 591 Gene3D Tetratricopeptide repeat domain 44 185 IPR011990 GO:0005515
Prci2g0875 591 Gene3D Tetratricopeptide repeat domain 186 410 IPR011990 GO:0005515
Prci2g0875 591 SUPERFAMILY CBS-domain pair 434 575 IPR046342 -
Prci2g0875 591 PANTHER OS09G0431600 PROTEIN 509 580 IPR044781 -
Prci2g0875 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 147 IPR002885 -
Prci2g0875 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Prci2g0875 591 ProSiteProfiles CBS domain profile. 516 581 IPR000644 -
Prci2g0875 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0875 Prci-Chr2 6603769 6610373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0875 46 301 Miscellaneous Gene Families AT4G11690 29.811 6.21e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0875 - - pcin:129299111 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0875 2 6603769 6610373 Prci2g0875 2 6603769 6610373 ECH