Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0816 ATGGCGTCAGCTTGTAGGGTTTTATCATCAGTGAGGAAGAGGTACGCTGGAAGGTTTAATTTTCTAGCACTTCCTTCAAGCTCTCACCATTTGAATTTCCACAAAGAATCAAGCTCAAATCCTTTGCTTATCAAATTACTTCGGGTATCCAATTCGTGCATTAAGCCCACGCTGGATCAGGAATTGGCTTCCCTTAAAAGCTCCGAATTTTCCTGGGAATCTCTGGTTTCCTGTCTCAGGCCTTCTTCTCCTGAGAAATCGCGGCTGGTTTTGGAATGGATTTTGGAGAAATTGCTGAAAGACAATGAAAGAAATCACAGTGCCTTCTCCGAATTCATATTTCTCTGTGCCAAGCTTCAGAATGTGTCACTCGCTATGCAAGCGTTTGCTTCTATGGAGGCTAATGGAGTTAAACCCACATCCCTCGTTTTTAATTCCCTTATAAATGCCTGCTTGTGTTCACATAACATCATTACAGCATTTAGCTTATTTGAGATCATGGAAAGTTCAGAGAGCTATGAACCTGATTTTCATACTTACAACATCTTCATTACAGCATTTTCAATTTCAGGGAACGTTGATGCCATGCTAGCTTGGTACTCAGCTAAAAGAGCTGCTGGGTTTGGTCTTGACCTTCAAACATTTGAATCCCTTGTATCAGGCTGTATCAAATCAAACAATTTTGAACTTGCCGATGGAATTTATGAAGAAATGAGGGCATCGGGAATTATACCTAGCATATCCATTCTGGAAAATATGCTTGAAGGGCTTTGCAAGCAAAAGAGTTTGGGTCGAGCTGAGGAGTTCTTCAAGTTTGTGGCAAGTGTCAGATGGGAGATCAATGAAAACATGACTGATAAATTAATGGCATTATATCAAGAATTTGGGCAAGTGAAAAAGATGGAGGAGCTGCTTGAAACTATGAAGTCCCATCCTATTAACGATGTAGTTCTCTCCCGAATTCACTGTGGGATTATAGGGATGTATGCCAAACTGGATAGATTGGATGATGTAGAGTTTGCCGTGGGAAGAATGTTGAAACAGGGACTATCATTCACAAGTATAGATGATGTTGAAAAGGTTATCTGCTCATACTTCAGAAGAGAAGCTTATGATAGGCTAGACATATTCTTGGAATGTATAGAGACTAGCTATACGCCCAGCAGATCCACTTACGATTTGTTGATATCTGGCTATAGAAGAGCGGGATTGCATGAAAAAGTAGATTCAATAACGGAAGCCATGAAATCAGCTGGTGTTACGTAG 1266 0.406 MASACRVLSSVRKRYAGRFNFLALPSSSHHLNFHKESSSNPLLIKLLRVSNSCIKPTLDQELASLKSSEFSWESLVSCLRPSSPEKSRLVLEWILEKLLKDNERNHSAFSEFIFLCAKLQNVSLAMQAFASMEANGVKPTSLVFNSLINACLCSHNIITAFSLFEIMESSESYEPDFHTYNIFITAFSISGNVDAMLAWYSAKRAAGFGLDLQTFESLVSGCIKSNNFELADGIYEEMRASGIIPSISILENMLEGLCKQKSLGRAEEFFKFVASVRWEINENMTDKLMALYQEFGQVKKMEELLETMKSHPINDVVLSRIHCGIIGMYAKLDRLDDVEFAVGRMLKQGLSFTSIDDVEKVICSYFRREAYDRLDIFLECIETSYTPSRSTYDLLISGYRRAGLHEKVDSITEAMKSAGVT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0816 421 NCBIfam pentatricopeptide repeat 214 246 IPR002885 -
Prci2g0816 421 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 421 IPR002885 -
Prci2g0816 421 Pfam PPR repeat 179 200 IPR002885 -
Prci2g0816 421 Pfam PPR repeat 214 243 IPR002885 -
Prci2g0816 421 Pfam PPR repeat 390 420 IPR002885 -
Prci2g0816 421 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Prci2g0816 421 Pfam Pentatricopeptide repeat domain 109 151 IPR002885 -
Prci2g0816 421 Gene3D Tetratricopeptide repeat domain 72 251 IPR011990 GO:0005515
Prci2g0816 421 Gene3D Tetratricopeptide repeat domain 267 421 IPR011990 GO:0005515
Prci2g0816 421 PANTHER EXPRESSED PROTEIN 34 420 IPR044179 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0816 96 413 Glycosyltransferase AT1G05670 19.505 1.56e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0816 - - gmx:100778561 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0816 2 6184234 6186323 Prci2g0816 2 6184234 6186323 ECH