Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0802 ATGGCTCATGTCTACGTGAGTGTATGGTTCTTTATTGATATTAATAAGAAAGTGACGCGACAAGTATGCGATACACCTCACCTTTACACTCTACTTTTTCAATCCGTTTTTGGGAGAACTATCTTGAATGTTCTCTTTGTCTTCCTAATTTGCGCCTGCACCGTTTCTTTAGTTGAGTTTTACTTCAGTGACAGCAACCTTCCTAGGGACAATTTTTCAAGAACTATCGCTGAAAGCGAAGATGGCATGTTTAGTTTGGCTTTGATTTGTTCTTTTACCCGGATGAGAAAACATCTTAATCTGGGACGATTGTAAAAGCCGGATGAAGTCCCTGAAGATACTGTGAAAGCTGTTGCTGAAACTTTGAGGAAATCAGAATCACTTAAGATATCCGAGGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCTGAAACCTGAAGAGATTGAGCAGGTGGACACCAGAACAATAGCGGCATCACCATTTGAGCATGATGTGAAGCGAGAAGATATAGAGGCATTCTTTGGTCAATTTGCCAAGGTTAATAGTGTCAGGCTTCCTCGTCATGTTGGAGACAAGTTCTTCTGTGGCACTGCTCTCATTGAGTTTGCAGCAGAACAAGATGTCGGACAAGTTTTGGAGAAAAAATTGGCCTATGCAGGAGCTGAGTTAGAATTGAAGTTTAAGAAAGACTTCGATGCAGAGAGAACAAAGGAGTTGGAAGAGTATGGAAAATCTGGTGCCCATATGGTTTCAAGTCACCAGAACAACACAAATGCTGAAGCACATTACCCCAAAGGCTTGATTATTTCCTTCAAGCTAAAAACGGATTCAGATGATGTTCCTCTGGGACAAAATGGTGTTCATCAAGAAGCCAATGGCAGCAATAGTGCCTCAAACAAAGATGAACAAAATCCATCAGAAGATGTTATTGAGGTTAATGAACAAAAGGCGTCAGATAATATTGACAATGATAAAGAACACAAAGAGGCCAGTGAAGGAAATGAAGCTAAAGGTGAAGAAAAGATTCAAGAAAGTGAAGTAAAACTTTCAGCCAATGCTTACAAGGACAACATGAATGTTGTGATACGTGAGGATTTGAAGGGTGTCTTTGAGAAGTTTGGTTCTGTGAAGTACATTGATTTCAAGATTGGAGCAGATTCAGGATACATCCGGTTTGAAGAACCTGAGGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTCTTGCTGAAAAGGGGGGCTGCTGTGAAGAACTTTATTGCTACTCTGGATCCTGTGTCTGCTGTGTGATGCTCCCACAGGCGACGCCGAAAGGAATACTGAGCCCTCTCCGTTGGTGGACCTTGGTGGTTTTTTTTTTTTTTGGGGGGGTGGGAACAAGTGGTCCATCTTCAAGATTTGAATTGATGATGGAGACTAGTCTATTAATCTCATACTCTTGTTTGCCTACTCAGTACATTGATTTCAAGATTGGAGCAGATTCAGGATACATCCGGTTTGAAGAACCTGAGGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTCTTGCTGAAAAGGGGGGGCTGGCTGTGAAGAACTTTGCTACTCTGGATCCTGTGTCTGGCGACGCTGAAAGGGAATACTGGAGCCTTCTCCGTGGTAATCAAGAAAAGCACCGAGACAGCAAGAACACCCGAGGAAGGGGAGGAAGGCACGGTAGGGGGGCAAAGCATTCCCGCTCTAGAGAGAGAGAATCTGCAATGGGTCGCCCAAATAAAGCTCAAAGAGTTGGAGCAGCTTAA 1776 0.4347 MAHVYVSVWFFIDINKKVTRQVCDTPHLYTLLFQSVFGRTILNVLFVFLICACTVSLVEFYFSDSNLPRDNFSRNXIAESEDGMFSLALICSFTRMRKHLNLGRLXKPDEVPEDTVKAVAETLRKSESLKISEDGKKVGRTTELLKPEEXIEQVDTRTIAASPFEHDVKREDIEAFFGQFAKVNSVRLPRHVGDKXFFCGTALIEFAAEQDVGQVLEKKLAYAGAELELKFKKDFDAERTKELEEYGKSGAHMVSSHQNNTNAEAHYPKGLIISFKLKTDSDDVPLGQNGVHQEANGSNSASNKDEQNPSEDVIEVNEQKASDNIDNDKEHKEASEGNEAKGEEKIQESEVKLSANAYKDNMNVVIREDLKGVFEKFGSVKYIDFKIGADSGYIRFEEPEAAQKARAAAVLAEKGGCCEELYCYSGSCVCCVMLPQATPKGILSPLRWWTLVVFFFFGGVGTSGPSSRFELMMETSLLISYSCLPTQYIDFKIGADSGYIRFEEPEAAQKARAAAVLAEKGGLAVKNFXATLDPVSGDAEREYWSLLRGNQEKHRDSKNTRGRGGRHGRGAKHSRSRERESAMGRPNKAQRVGAA 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0802 595 PANTHER LUPUS LA PROTEIN-RELATED 55 338 IPR045180 -
Prci2g0802 595 CDD LA_like_plant 55 140 - -
Prci2g0802 595 CDD RRM1_La 158 230 - -
Prci2g0802 595 Pfam RNA binding motif 365 412 IPR014886 GO:0003723
Prci2g0802 595 Pfam RNA binding motif 485 563 IPR014886 GO:0003723
Prci2g0802 595 Gene3D - 52 146 IPR036388 -
Prci2g0802 595 SUPERFAMILY RNA-binding domain, RBD 367 407 IPR035979 GO:0003676
Prci2g0802 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 242 IPR000504 GO:0003723
Prci2g0802 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 218 IPR000504 GO:0003723
Prci2g0802 595 SMART la 48 141 IPR006630 -
Prci2g0802 595 SUPERFAMILY RNA-binding domain, RBD 148 233 IPR035979 GO:0003676
Prci2g0802 595 Gene3D - 147 241 IPR012677 -
Prci2g0802 595 Gene3D - 475 563 IPR012677 -
Prci2g0802 595 Gene3D - 334 421 IPR012677 -
Prci2g0802 595 MobiDBLite consensus disorder prediction 283 348 - -
Prci2g0802 595 MobiDBLite consensus disorder prediction 308 348 - -
Prci2g0802 595 MobiDBLite consensus disorder prediction 291 307 - -
Prci2g0802 595 MobiDBLite consensus disorder prediction 546 595 - -
Prci2g0802 595 ProSiteProfiles La-type HTH domain profile. 44 150 IPR006630 -
Prci2g0802 595 Pfam La domain 58 125 IPR006630 -
Prci2g0802 595 SUPERFAMILY "Winged helix" DNA-binding domain 51 143 IPR036390 -
Prci2g0802 595 PRINTS Lupus La protein signature 198 216 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Prci2g0802 595 PRINTS Lupus La protein signature 83 98 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Prci2g0802 595 PRINTS Lupus La protein signature 57 74 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Prci2g0802 595 ProSiteProfiles xRRM domain profile. 344 580 IPR014886 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0802 K11090 - qsa:O6P43_015529 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0802 2 6114516 6119922 Prci2g0802 2 6114516 6119922 ECH