Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0563 ATGTCTGGTGGCAGATGTAGCGTAGTGTGGTTCAGAAGAGATCTGAGGGTGGAGGATAATTCGGCACTGACAGCGGGAATGAGAGCAGGATCTGTGGTAGCAGTTTTTATATGGGCACCTGAAGAAGAAGGTCAATACCAGCCAGGAAGGGTGTCCAGGTGGTGGCTCAAACACAGTTTGGCTTACCTTGAGTCTTCTTTGAGAAATCTTGGCATTTCTCTTGTCACCAAGCGATCCACTGATAGTGTTTCTTCTCTCCTGGAGGTTATCAACTCCACCGGAGCCACTCAACTCTTTTTTAACCACTTATATGATCATCTATCACTTATCAGGGATCACAGGGCCAAGGAGGTGCTGACTGCCCAAGGCATAGCCGTACGCTCCTTCAATGCAGATTTACTGTATGAACCATGGGATGTGAATGATGCGGATGGCCAGTCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTCAGCATGCCTTATGACCCCGAGGCACCTCTTCTCCCTCCTAAAAGAATTATTGCAGGCGATCTGTCCAGGTGCTCTTCTGAAACACTAATGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCCCGGGCATGGTCACCTGGATGGAGCAATGCCGACAAGGCTTTAACCACGTTCATAAATGGGCCACTGATTGAGTACTCAGAAAATCGCAGGAAAGCTGACAGTGCCACAACCTCATTTCTTTCCCCACATTTACACTTCGGAGAGGTGAGCGTCAAAAAGGTCTTCCATCTGGTCCGAATTAAGCAGGTCTTATGGGCCAACGAAGGGAACAAGGCTGGTGAAGAAAGTGTCAACCTGTTTCTCAAGTCTATTGGTCTCAGAGAGTATTCAAGGTACATCAGTTTCAACCATCCCTATAGTCATGAAAGGCCTCTCCTAGGCCATCTCAGGTTCTTTCCATTAGTAAATGAAAACTACTTTAAGGCGTGGAGACAAGGAAGAACTGGGTACCCCTTGGTGGATGCTGGGATGAGAGAGCTGTGGGCCACTGGTTGGCTGCATGATCGGATACGTGTTGTTGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCCTGGAGATGGGGAATGAAATATTTTTGGGATACTCTCTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATACATTTCTGGCACTCTCCCTGATGGCCGTCCATTGGAGCAAATAGATAACCCACAGTTTCAGGGATACAAATTTGATCCAAATGGAGAATACGTACGACGTTGGCTTCCAGAACTTGCCAGAATACCCACCGAATGGATTCATCATCCATGGAATGCGCCAGAACCTGTGCTACAAGCCGCTGGAATTGAATTGGGGTCAAATTACCCTCTTCCTATTGTTGGAATAGATGCTGCAAAAGCCAGATTGGAAGAAGCGCTAACAGAAATGTGGCAACAAGTAGCAGCTTCAAGGGCCGCCATTGAAAGTGGAACTGAAGAAGGACTTGGGGACTCCTTCGAATCAACCCCTATTGCCTTTCCTCAAGACATACAAATGGAGGAAACTGATGAACGTATTAGACACAATCCACCTCCTGTTGCTCGCCCCTACGAGGATCAGAGGGTCCCAAGCATCACTTCTTCCCTTGTGCGAGTGGAGGAGGAAGAAACTTCTTCAGATCTTCGAAACACAACAGGAGACAGCAGAGCTGAAGTGCCAAACAATGTAAATGTGCGACAAAATGCAAGGGGAAGAGAAACATTGAACCAACAGCCGTTGCAGGCTGTTCAAAGAAATACTCAACTACAGAATACTACAGTAGAACTGAGAAATGCAGTTGAAGATTCCACAGCAGAATCTTCAAGTAGTAGTAGGAGAGAAAGGGACGGAGGTGTAGTTCCAGTATGGTCTCCTCCAGCTTCTAGTTATTCAGAGCAAATTGTAGGAGATGAAAATGGCAGAGGAGCTAGTTCATCCTACTTGCAGAGGCATCCTCAATCTCACCAACTTATGAATTTGAGGCGGCTACCTCAGACTGGGTAA 2043 0.467 MSGGRCSVVWFRRDLRVEDNSALTAGMRAGSVVAVFIWAPEEEGQYQPGRVSRWWLKHSLAYLESSLRNLGISLVTKRSTDSVSSLLEVINSTGATQLFFNHLYDHLSLIRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDADGQSFTTFSAFWERCLSMPYDPEAPLLPPKRIIAGDLSRCSSETLMFEDESEKASNALLARAWSPGWSNADKALTTFINGPLIEYSENRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLRFFPWXVNENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRPLEQIDNPQFQGYKFDPNGEYVRRWLPELARIPTEWIHHPWNAPEPVLQAAGIELGSNYPLPIVGIDAAKARLEEALTEMWQQVAASRAAIESGTEEGLGDSFESTPIAFPQDIQMEETDERIRHNPPPVARPYEDQRVPSITSSLVRVEEEETSSDLRNTTGDSRAEVPNNVNVRQNARGRETLNQQPLQAVQRNTQLQNTTVELRNAVEDSTAESSSSSRRERDGGVVPVWSPPASSYSEQIVGDENGRGASSSYLQRHPQSHQLMNLRRLPQTG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0563 681 PRINTS DNA photolyase signature 332 348 IPR002081 -
Prci2g0563 681 PRINTS DNA photolyase signature 352 370 IPR002081 -
Prci2g0563 681 PRINTS DNA photolyase signature 391 405 IPR002081 -
Prci2g0563 681 PANTHER CRYPTOCHROME 5 490 IPR002081 -
Prci2g0563 681 MobiDBLite consensus disorder prediction 640 681 - -
Prci2g0563 681 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
Prci2g0563 681 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Prci2g0563 681 Gene3D HUPs 8 206 IPR014729 -
Prci2g0563 681 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Prci2g0563 681 MobiDBLite consensus disorder prediction 564 620 - -
Prci2g0563 681 Pfam DNA photolyase 7 163 IPR006050 -
Prci2g0563 681 MobiDBLite consensus disorder prediction 519 535 - -
Prci2g0563 681 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 486 IPR036134 -
Prci2g0563 681 Pfam FAD binding domain of DNA photolyase 283 481 IPR005101 -
Prci2g0563 681 Pfam Blue/Ultraviolet sensing protein C terminal 511 626 IPR020978 -
Prci2g0563 681 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Prci2g0563 681 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Prci2g0563 681 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Prci2g0563 681 MobiDBLite consensus disorder prediction 517 681 - -
Prci2g0563 681 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Prci2g0563 681 Gene3D - 134 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0563 Prci-Chr2 4113004 4117877 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0563 K12118 - pop:7495156 1179.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0563 2 4113004 4117877 Prci2g0563 2 4113004 4117877 ECH