Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0546 ATGTTCAAAACATCTGAGAGAAATATGAGCAAGGTGGAGAACAACGTGAAGAGAGATGAAGTGTTGGGAACGTGGCGGAATGGATTTCCAAACACATCATGTCCCAATCTTCCTCATTGCCATCGTTACAATGAGCATTTGGCGATTAAATCCCCTGTATGGAGGGTCTCTCACACATCACATTCTCCACCGTTAACTTCTTTCGCTGACGGGCTTCATGTTTCTGCCCATAACTCCTCATACTCAGCACCATTTCAGGACAGAAAGCATGTAACACCCCACGATCACCACTCAACTAAATTGTTGTTGGACCCCGAGTCATCGGATTTCCATATTGGGAAGAGTATTATTGATAATCAAGTGGTTGATCTGGACCTGTCTCGTGATTTCTATAGAATGAATATTATAGACGGACGGGGAAATGGTAACAAAACAAAGGCACCTGAAGCGGACTCCTATGGATTTAGATTTGACGCCTTTTCGTCTTTCGATATAAATATTCCCGGCGTTACTGAAACACGGAGCTCCTATGAAGATTTTTGCAATGAAGTTCCCGCTCCTAATTATGAGTGTATCTCATCGTCTACTTGGGGAGTTTCACCAAGTTTGGTTGCTGATATGAAGTGGAACAACCATACCTTGGAGAAAGGACACACTTCTTCCCTCGCTCATGGTCAATCCAGCGCTCTGAGTTTGTGCTCTGGGTGGAACATGAACCAAACATATCATCAATTGGAGCACAGCAAGAAACAGGGGAGCAGTAGCTATGATGGAGAAGTTCAACCGCAGAAGCCATCTATCATCACCCCCTACCTCTGTGATGGTTTAACTAGCTCACAACTTTGTGGAGTGGATTATGATGGAAGCAGGAGTGTCGAAAACCCCTTAAGATTCTCTCAAATCATGCAACCCAAGCTAGCTTCACATCAGGATATACTAGAAACAAGGGGAATTGCTAACTTTGAGCTGCCTGAATTTCTCCCGTCCAAAAGAGCTGGTGGCGATCCGGTGGCATTTCGATGTGATAATAGTTTTATCATACAGGGAAGAGATATAAATTATTGCACAGACAAAGGATACAATTCTTTGAGGGGTACCAAAAAGAATTCCCTCAATGAGAATGCATTTGCAACTGTGGGGGAGGAAGTTTCTAAACACAATTCTTATACCCCTGGTAGTCAAATTTGTGCGAACAAAGGAAGTCTTGTTGGTGATTTCCCACTGCCCTCACTTCTGAGTTTCTGTTCCTTGGCTGAGTGCCAAGGTTACATTTGCTTTCTGGCAAAGGATCAGAACGGATGTCGCTTCCTACAAAGGATGGTTGATAAGGGAAACTCTAAGGACATGCATATAGTATTTGAGGGGATCATAGATAATGTTGTTGAACTTATGATGGACCCTTTTGGTAACTATCTTGTGCAGAAGTTGCTGGACGTGTGCAGAGAAGAAGAGAAATTGCAGATTGTTTCCATGGTGACTAAAGAACCAGGGCAGCTCGTCAGAATATCTTTAAACACGCATGGCACGCGGGTCATCCAGAAGTTGATTGAGACACTCAACTCTAGGAAACAAATTTCACTAGTGAAGTCAGCCCTTCAAGCAGGTTTTCTTGATCTTGTTAAGGATCTGAATGGAAATCACGTGATACAACGATGCTTGCAATGCCTTAGCTGTCAAGATAATGAGTTTATTTTTTATGCCGCTGCAAAGTTTTGTGTTGACATAGCTACTCATCGACATGGATGTTGTGTATTGCAACGTTGCATTGATCATTCAATTGGCAAATATCGAGATAAGCTGGTCGCAGAAATTTGTAGGCATGGCCTTCACCTTGCTCAAGACCCTTTTGGAAATTATGTTGTTCAGTATATAATAGAGATGGAGATTCCAACTGCCTCAGCCAAGCTGGTTTCTCAGTTCAAAGGGAACTACGTAAATCTGTCAACGCAAAAATTTAGCAGTCATGTGGTCGAAAAATGCCTTAAGCATGTTGGAGAGAGCAGATCAAGGATCGTCCGAGAATTGCTGTCTTCACCTCACTTCGAACAGTTGTTGCAAGATCCATATGCCAACTATGTCATTCAGTCTGCTCTTGCAGTAACAAAGGGTTCACTTCACACTTCTTTGGTTGAAGCAGTACGTCCTTACAAAATCTTGCGCACCAGCCCGTATTGCAAGAGAATTTTCTCGGGAAATCTACTCAAGAAGTGA 2211 0.4292 MFKTSERNMSKVENNVKRDEVLGTWRNGFPNTSCPNLPHCHRYNEHLAIKSPVWRVSHTSHSPPLTSFADGLHVSAHNSSYSAPFQDRKHVTPHDHHSTKLLLDPESSDFHIGKSIIDNQVVDLDLSRDFYRMNIIDGRGNGNKTKAPEADSYGFRFDAFSSFDINIPGVTETRSSYEDFCNEVPAPNYECISSSTWGVSPSLVADMKWNNHTLEKGHTSSLAHGQSSALSLCSGWNMNQTYHQLEHSKKQGSSSYDGEVQPQKPSIITPYLCDGLTSSQLCGVDYDGSRSVENPLRFSQIMQPKLASHQDILETRGIANFELPEFLPSKRAGGDPVAFRCDNSFIIQGRDINYCTDKGYNSLRGTKKNSLNENAFATVGEEVSKHNSYTPGSQICANKGSLVGDFPLPSLLSFCSLAECQGYICFLAKDQNGCRFLQRMVDKGNSKDMHIVFEGIIDNVVELMMDPFGNYLVQKLLDVCREEEKLQIVSMVTKEPGQLVRISLNTHGTRVIQKLIETLNSRKQISLVKSALQAGFLDLVKDLNGNHVIQRCLQCLSCQDNEFIFYAAAKFCVDIATHRHGCCVLQRCIDHSIGKYRDKLVAEICRHGLHLAQDPFGNYVVQYIIEMEIPTASAKLVSQFKGNYVNLSTQKFSSHVVEKCLKHVGESRSRIVRELLSSPHFEQLLQDPYANYVIQSALAVTKGSLHTSLVEAVRPYKILRTSPYCKRIFSGNLLKK 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0546 736 Gene3D - 412 733 IPR011989 -
Prci2g0546 736 FunFam Pumilio homolog 9 410 736 - -
Prci2g0546 736 SUPERFAMILY ARM repeat 417 729 IPR016024 -
Prci2g0546 736 ProSiteProfiles Pumilio RNA-binding repeat profile. 639 677 IPR001313 GO:0003723
Prci2g0546 736 ProSiteProfiles Pumilio RNA-binding repeat profile. 491 529 IPR001313 GO:0003723
Prci2g0546 736 CDD Pumilio 420 730 IPR033712 GO:0003723
Prci2g0546 736 ProSiteProfiles Pumilio RNA-binding repeat profile. 455 490 IPR001313 GO:0003723
Prci2g0546 736 ProSiteProfiles Pumilio RNA-binding repeat profile. 531 566 IPR001313 GO:0003723
Prci2g0546 736 ProSiteProfiles Pumilio RNA-binding repeat profile. 416 454 IPR001313 GO:0003723
Prci2g0546 736 Pfam Pumilio-family RNA binding repeat 609 626 IPR001313 GO:0003723
Prci2g0546 736 Pfam Pumilio-family RNA binding repeat 643 676 IPR001313 GO:0003723
Prci2g0546 736 Pfam Pumilio-family RNA binding repeat 498 522 IPR001313 GO:0003723
Prci2g0546 736 Pfam Pumilio-family RNA binding repeat 425 457 IPR001313 GO:0003723
Prci2g0546 736 Pfam Pumilio-family RNA binding repeat 572 605 IPR001313 GO:0003723
Prci2g0546 736 Pfam Pumilio-family RNA binding repeat 459 491 IPR001313 GO:0003723
Prci2g0546 736 Pfam Pumilio-family RNA binding repeat 680 698 IPR001313 GO:0003723
Prci2g0546 736 Pfam Pumilio-family RNA binding repeat 536 565 IPR001313 GO:0003723
Prci2g0546 736 ProSiteProfiles Pumilio RNA-binding repeat profile. 603 638 IPR001313 GO:0003723
Prci2g0546 736 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 216 729 - -
Prci2g0546 736 SMART pum_5 639 673 IPR001313 GO:0003723
Prci2g0546 736 SMART pum_5 676 711 IPR001313 GO:0003723
Prci2g0546 736 SMART pum_5 455 490 IPR001313 GO:0003723
Prci2g0546 736 SMART pum_5 419 454 IPR001313 GO:0003723
Prci2g0546 736 SMART pum_5 603 638 IPR001313 GO:0003723
Prci2g0546 736 SMART pum_5 567 602 IPR001313 GO:0003723
Prci2g0546 736 SMART pum_5 531 566 IPR001313 GO:0003723
Prci2g0546 736 SMART pum_5 494 529 IPR001313 GO:0003723
Prci2g0546 736 ProSiteProfiles Pumilio RNA-binding repeat profile. 567 602 IPR001313 GO:0003723
Prci2g0546 736 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 398 736 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0546 Prci-Chr2 3989275 3994084 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0546 - - pcin:129297951 1502.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0546 2 3989275 3994084 Prci2g0546 2 3989275 3994084 ECH