Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0400 ATGCCGGCGATGGACGTGAAAAACAGGGGAATCGCCATGGCTCTCTTGTTCATTCTGGGATTGTCTTCTATTTTGCCTCTCTGTTTCTCGGATGCCAATCAACCCAGTCTCACCAAAAAGCCCCAACCACCAACTTCTAATAATCGTATTGGCTCCTCCGTTGTTCTTCGGGTTCAAGGGAATGTGTATCCCCTCGGGTATTACTCAGTTTCCCTGAACATTGGCAATCCCCCAAAAGCTTACGACCTTGACATCGACTCCGGCAGCGACCTCACTTGGGTACAGTGCGACGCACCTTGTAAAGGTTGCACCAAGCCTAAGAATCAACAGTATAAGCCGAACAAGAAGAACCTTGTTCCGTGTGGGGACCAATTGTGTGCTGGAGTTCAGTCACCAGGGAGCCATCACTGTCAATCCCCCAATGACCAATGCGACTATGAGGTCGAGTATGCAGACCATGGCTCATCACTGGGCGTGCTGGTCCGGGACTACATTCCGCTCCGGCTCACCAACGGGTCCGTGCTTGGTCCTCTGGTGGCTTTCGGGTGTGGGTACGATCAAGCCTATTCTGGTCCAACGTCACCGCCATCTACAGCAGGAGTGCTAGGTCTTGGAAATGGCAAGTCAAGCCTCTTGTCTCAGCTTACATCTCGTGGTCTCATTCGCAACGTGGTGGGCCACTGCCTAAGTGGGCGAGGTGGAGGATTTTTATTTTTCGGAGATCATCTCGTTCCCTCCTCTGGAGTTTCTTGGACCCCAATTTTGCCCGGTTCCTCCGTAAAACACTACGTCTCTGGACCTGCGGATCTGCTTTTCAATGCAAAGCCAACTTCTGTGAAAGGTCTTCAGGTTATCTTTGACAGTGGGAGCTCCTACACATACTTCAATTCCCAAGATTATCGAGCCATCGTTAATACGATAGTTGATGATTTGAAGGGGAAGCAGTTGAGCAGAACAACAGCAGATCCGTCTCTTCCAGTTTGCTGGAAGGGTGCAAAGCCATTCAAGTCTTTGGGAGATGTGGCCAACCTTTTTAAGCCCTTGACACTGAGCTTCACTAGAACAAAGAACGTACAGCTGCAATTGCCACCATCATCTTATCTCATTCTTACTAAATATGGCAATGCGTGCTTGGGAATTCTTAACGGCTCGGAAGCTGGACTGGGAAATCTTAACATCATTGGGGACACCTTTTTACAAGATAAAATGGTGATTTATGACAACGAGAAAAAGCAGATTGGATGGATTTCCGCTAACTGTGATAGGCTTCCCGAGTCATGA 1281 0.4895 MPAMDVKNRGIAMALLFILGLSSILPLCFSDANQPSLTKKPQPPTSNNRIGSSVVLRVQGNVYPLGYYSVSLNIGNPPKAYDLDIDSGSDLTWVQCDAPCKGCTKPKNQQYKPNKKNLVPCGDQLCAGVQSPGSHHCQSPNDQCDYEVEYADHGSSLGVLVRDYIPLRLTNGSVLGPLVAFGCGYDQAYSGPTSPPSTAGVLGLGNGKSSLLSQLTSRGLIRNVVGHCLSGRGGGFLFFGDHLVPSSGVSWTPILPGSSVKHYVSGPADLLFNAKPTSVKGLQVIFDSGSSYTYFNSQDYRAIVNTIVDDLKGKQLSRTTADPSLPVCWKGAKPFKSLGDVANLFKPLTLSFTRTKNVQLQLPPSSYLILTKYGNACLGILNGSEAGLGNLNIIGDTFLQDKMVIYDNEKKQIGWISANCDRLPES 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0400 426 Gene3D Acid Proteases 242 423 IPR021109 -
Prci2g0400 426 FunFam Aspartyl protease family protein 44 241 - -
Prci2g0400 426 ProSiteProfiles Peptidase family A1 domain profile. 68 416 IPR033121 -
Prci2g0400 426 PANTHER ASPARTYL PROTEASES 60 414 IPR001461 GO:0004190|GO:0006508
Prci2g0400 426 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 284 295 IPR001969 GO:0004190|GO:0006508
Prci2g0400 426 PRINTS Pepsin (A1) aspartic protease family signature 392 407 IPR001461 GO:0004190|GO:0006508
Prci2g0400 426 PRINTS Pepsin (A1) aspartic protease family signature 74 94 IPR001461 GO:0004190|GO:0006508
Prci2g0400 426 PRINTS Pepsin (A1) aspartic protease family signature 284 295 IPR001461 GO:0004190|GO:0006508
Prci2g0400 426 SUPERFAMILY Acid proteases 60 423 IPR021109 -
Prci2g0400 426 FunFam Aspartic proteinase Asp1 isoform A 245 424 - -
Prci2g0400 426 Gene3D Acid Proteases 45 241 IPR021109 -
Prci2g0400 426 Pfam Xylanase inhibitor C-terminal 280 415 IPR032799 -
Prci2g0400 426 Pfam Xylanase inhibitor N-terminal 68 241 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0400 Prci-Chr2 2851526 2854287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0400 52 426 Miscellaneous Gene Families AT1G44130 61.702 5.53e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0400 - - qsa:O6P43_019772 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0400 2 2851526 2854287 Prci2g0400 2 2851526 2854287 ECH