Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0396 ATGCCAACTTCCCCTTCGGAAAACCGAACCAAATGGCGGAAGCGCAAGAGAGAACCCCAAATCAGCCGCCGGCAACCGAAGCATGAGGACGAGGACGACGAAGAAGAAGACCCAAATGGCGACGACGACCACCTCGAGCGACAGGATGACTCCGAGGACCAGACCCAACACCCTAACCCCCAATCTGGTTCTAATTCTCAAGCGCAGCTCGAGATCGAGGTCTTGTCTGACGATGGAGTCCAAATTTCCCAGTTCCCTCGAGTGATCAAGCGCACTGTCAATCGCCCTCACGCATCCGTTACTGCAATTGTCGCCCTGGAGCGTGCCAATGAGTCTGGAGACAACAAGGGTCAGCTGCAGAATTCTCCATTTCTGGAGAATTTGTCTTACGGGCAGCTTCAGACGCTTTCCACCGTGCCCGCTGATAGTTCAGCTCTGGATCAGGACCGTAACGAGGGAAGTAATTCGGCTTATGTGATCACCCCGCCCCCCCTACTGGAAGGCCGTGGCATTGTCAAGCGGTTTGGGAGTAGGGTTCTGGTAGTTCCAATGCATTCAGAATGGTTTTCACCAGCTACAGTGCATCGGCTTGAGAGACAAGTCGTGCCACGGTTCTTCTCTGGAAAATCACCAGATCATACCCCAGAGAAGTACATGGAATGTAGAAATTATATAGTTGCACGATACATGGAAGACCTGGGGAAGAGGATTACAATTTTTGATTGCCATGGATTGTTAGTTGGGGTTGATAATGAAGATTTAACTCGGATTTTCCGGTTTCTTGATCATTGGGGAATCATCAACTACTGTGCTCTTGTGCCAAGTCATGAGCCTTGGAATGACAAGTCATACCTAAAGGATGAGGCAAGTGGTGAGATTCGTGTGCCATCAGATGCCTTAAAATCTATTGATGGTTTGATCAAATTTGACAAGCCGAAGTGTAAACTCAAAGCAGAAGAAATTTATTTATCATTGACAACTCAGAATGCTGATATTTCTGATTTGGAGGACAGAATAAGGGAGCATCTGTCTGAAAATCACTGCAATTATTGTTCTCGTCCGCTTCCTGCTGTTTACTATCAGTCACAAAAAGAGGCTGATGTTCTTCTCTGCACTGATTGTTTCCATGATGGGGGATTTGTCGTTGGTCACTCAAGTATAGATTTTATTAGGGTTGATTCAACAAGAGATTATAGTGATCTAGATGGGGATAGTTGGACTGATCAAGAAACCTTGCTGCTGCTTGAGGCGATGGAGATTTACCATGAGAATTGGAATGAAATTGCTGAGCATGTGGGTACCAAATCAAAAGCACAATGTATTCTCCATTTTCTCCGTCTACCCATGGAAGATGGAAAATTGGAAAATATCAATGTTCCAAGGATGTCTTTGTCATCAAATATGTCAAATACAGATGATTGTGGAAGATTGCGTTCAAATTTAGGTGCGGAATTAGCAGGACCAACTCAGAGCATTGATCCTAACAGCAGGCTCCCTTTTTCAAATTCTGAAAATCCTGTTATGGCTCTGGTTGCCTTTTTGGCCTCTGCTATCGGACCAAGAGTAGCTGCTGCTTGTGCACATGCAGCATTGGCAGAATTGTCAGGGAATAATTCTGGTAGTGCGCCACAGGCAGAAGCACCAGGGCATAGCAACAGGATGAACTTGGAAAGCAAACTTAGTAAAGATGGTGGTCCTCTTGGAGAAATTGCAAATCCAAATCAGCAGGATGAGGATGAGGCAAAAGCGCTTGGTTCACAGGGTCCGAATGAGGGTGAGGCCATCCCTCTATCTTCTGAGAAAGTTAAAGATGCTGCTAAGGCAGGCTTGTCTGCTGCAGCAATGAAAGCTAAACTGTTTGCAGATCATGAAGAAAGAGAAATTCAGAGGCTATGTGCTAATATTATAAACCATCAGCTGAAAAGATTGGAGCTGAAGCTCAAGCAGTTCGCTGAAATTGAAACGCTGTTGATGAAAGAATGTGACCAAATGGAGAAGGCAAGACAAAGATTTGCTGCTGAACGTTCCCGTCTTGTATCCGCATGGCTTGGATCTGGTGTAGCCACAAACACATCAGGTGTGGGTCCTTCGACGGTTAGTAATAATAATGGCAACAGTAGACAACAAATGGCCTTTGGATCTCCTTCGCAGCCCAGTGTCTCAGCGTACACAAGTGGCCAAGCAGTTCATCCACATATGTCCTTTGTCCCACGGCCTTCCGTGTTTGGTGGGCTAGGGCAAAGGTTACCGCTTTCTATGATACAACAATCACAATCAACTTCTCCCAATCCCATGTTTAAAGCCCCTGGTAATGTGCAGCCTTCTACCAATCATCCTTTGTTGAGGCCTGTATCAGGTACTAACTCTGGTTTAGGTTAA 2379 0.4586 MPTSPSENRTKWRKRKREPQISRRQPKHEDEDDEEEDPNGDDDHLERQDDSEDQTQHPNPQSGSNSQAQLEIEVLSDDGVQISQFPRVIKRTVNRPHASVTAIVALERANESGDNKGQLQNSPFLENLSYGQLQTLSTVPADSSALDQDRNEGSNSAYVITPPPLLEGRGIVKRFGSRVLVVPMHSEWFSPATVHRLERQVVPRFFSGKSPDHTPEKYMECRNYIVARYMEDLGKRITIFDCHGLLVGVDNEDLTRIFRFLDHWGIINYCALVPSHEPWNDKSYLKDEASGEIRVPSDALKSIDGLIKFDKPKCKLKAEEIYLSLTTQNADISDLEDRIREHLSENHCNYCSRPLPAVYYQSQKEADVLLCTDCFHDGGFVVGHSSIDFIRVDSTRDYSDLDGDSWTDQETLLLLEAMEIYHENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPRMSLSSNMSNTDDCGRLRSNLGAELAGPTQSIDPNSRLPFSNSENPVMALVAFLASAIGPRVAAACAHAALAELSGNNSGSAPQAEAPGHSNRMNLESKLSKDGGPLGEIANPNQQDEDEAKALGSQGPNEGEAIPLSSEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECDQMEKARQRFAAERSRLVSAWLGSGVATNTSGVGPSTVSNNNGNSRQQMAFGSPSQPSVSAYTSGQAVHPHMSFVPRPSVFGGLGQRLPLSMIQQSQSTSPNPMFKAPGNVQPSTNHPLLRPVSGTNSGLG 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0396 792 ProSiteProfiles Zinc finger ZZ-type profile. 343 397 IPR000433 GO:0008270
Prci2g0396 792 Gene3D - 186 272 IPR036388 -
Prci2g0396 792 SUPERFAMILY Homeodomain-like 403 456 IPR009057 -
Prci2g0396 792 CDD SANT 405 447 IPR001005 -
Prci2g0396 792 ProSiteProfiles Myb-like domain profile. 398 448 IPR001005 -
Prci2g0396 792 MobiDBLite consensus disorder prediction 693 724 - -
Prci2g0396 792 SUPERFAMILY Homeodomain-like 179 272 IPR009057 -
Prci2g0396 792 MobiDBLite consensus disorder prediction 1 66 - -
Prci2g0396 792 PANTHER SWI/SNF COMPLEX-RELATED 69 679 - -
Prci2g0396 792 Pfam SWIRM domain 183 269 IPR007526 GO:0005515
Prci2g0396 792 MobiDBLite consensus disorder prediction 31 48 - -
Prci2g0396 792 ProSiteProfiles SANT domain profile. 401 452 IPR017884 -
Prci2g0396 792 MobiDBLite consensus disorder prediction 754 792 - -
Prci2g0396 792 FunFam SWI/SNF complex subunit SMARCC2 isoform c 186 276 - -
Prci2g0396 792 Pfam SWIRM-associated region 1 608 679 IPR032451 -
Prci2g0396 792 MobiDBLite consensus disorder prediction 536 600 - -
Prci2g0396 792 SMART sant 402 450 IPR001005 -
Prci2g0396 792 Pfam Myb-like DNA-binding domain 405 447 IPR001005 -
Prci2g0396 792 ProSiteProfiles SWIRM domain profile. 180 278 IPR007526 GO:0005515
Prci2g0396 792 Coils Coil 325 345 - -
Prci2g0396 792 FunFam SWI/SNF complex subunit SMARCC2 isoform C 402 452 - -
Prci2g0396 792 Gene3D - 402 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0396 Prci-Chr2 2792056 2797989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0396 348 444 EF-hand Containing Proteins AT3G07740 34.906 3.41e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0396 K11649 - qsa:O6P43_019776 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0396 2 2792056 2797989 Prci2g0396 2 2792056 2797989 ECH